| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_8.183 |
| Family | PL1 |
| Protein Properties | Length: 444 Molecular Weight: 48997.2 Isoelectric Point: 7.9815 |
| Chromosome | Chromosome/Scaffold: 8 Start: 1329915 End: 1333713 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 157 | 362 | 0 |
| IQDEPLWIVFKRDMVIKLKEELIMNSFKTIDGRGVNVHIANGACITIQFVTNIIIHGIHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWID HNSLSNCADGLIDAVMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQ GNRYLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 444 Download |
| MAASPRSFSL FAFLIIVFFV SVYSSAAESN EFKSRFHEIE QSLSSKNSST ADRSDDAWHE 60 HAVEDPEEVA SMVDMSIRNS TERRKLGFFS CVTGNPIDDC WRCDRKWHLR RKRLANCGIG 120 FGRSAIGGRD GKYYVVSDPG DDDPVNPKPG TLRHAVIQDE PLWIVFKRDM VIKLKEELIM 180 NSFKTIDGRG VNVHIANGAC ITIQFVTNII IHGIHIHDCK PTGNAMVRSS PSHYGWRTMA 240 DGDGISIFGS SHIWIDHNSL SNCADGLIDA VMGSTAITVS NNYFTHHNEV MLLGHSDSYT 300 RDKVMQVTIA YNHFGEGLIQ RMPRCRHGYF HVVNNDYTHW VMYAIGGSAN PTINSQGNRY 360 LAPANPFAKE VTKRVVTPNS AWRHWNWRSE GDLLLNGAFF TPSGAGAAAS YARASSLAAK 420 SSSMVGAITT SAGALSCRYG SQC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13229 | Beta_helix | 0.004 | 189 | 290 | 104 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
| COG3866 | PelB | 3.0e-27 | 182 | 358 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 8.0e-70 | 175 | 360 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-81 | 169 | 363 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX88800.1 | 0 | 1 | 443 | 1 | 437 | ripening-related pectate lyase [Mangifera indica] |
| GenBank | ABG66729.2 | 0 | 76 | 443 | 18 | 385 | pectate lyase [Carica papaya] |
| GenBank | ABG66730.2 | 0 | 76 | 443 | 2 | 369 | pectate lyase [Carica papaya] |
| RefSeq | XP_002265100.1 | 0 | 33 | 443 | 29 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002521130.1 | 0 | 4 | 443 | 6 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 95 | 436 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 95 | 436 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-17 | 164 | 351 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000003 | 173 | 337 | 120 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pe9_B | 0.0000000000002 | 173 | 434 | 78 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
