| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_862.2 |
| Family | PL1 |
| Protein Properties | Length: 387 Molecular Weight: 43116.3 Isoelectric Point: 7.6296 |
| Chromosome | Chromosome/Scaffold: 862 Start: 9403 End: 11631 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 107 | 277 | 0 |
| VIQDEPLWIIFQRDMVIKLKNELVMNSFKTIDGRGASVHIAGGPCITIHYATNIIIHGIHVHDCKQAGNANIRDSPHHSGWWTISDGDGISIFGGRHIWV DHCSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRXX | |||
| Full Sequence |
|---|
| Protein Sequence Length: 387 Download |
| MSIILLFYTL FFSLFFPHLV FSTSPLQDPE LVLQELQRSI NVSRTNLRYF SCGTGNPIDD 60 CWRCDPNWER NRQRLADCAI GFGKNAIGGR NDDDPVNPKP GTLRHAVIQD EPLWIIFQRD 120 MVIKLKNELV MNSFKTIDGR GASVHIAGGP CITIHYATNI IIHGIHVHDC KQAGNANIRD 180 SPHHSGWWTI SDGDGISIFG GRHIWVDHCS LSNCHDGLID AIHGSTAITI SNNYMTHHDK 240 VMLLGHSDSY TQDKNMQVTI AFNHFGEGLV QRMPRXXXXX XXXXXXXXGG SADPTIYSQG 300 NRFLAPDVRF RKEVTKHEDA PESEWRHWNW KSEGDMFLNG AYFRQSGGGA SSSYARASSL 360 SARPSSLVGA MTTTAGALNC RKGSRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-21 | 122 | 275 | 175 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 5.0e-47 | 126 | 303 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-55 | 120 | 307 | 212 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF63756.1 | 0 | 19 | 386 | 13 | 398 | AF243475_1 pectate lyase [Vitis vinifera] |
| RefSeq | XP_002268976.1 | 0 | 19 | 386 | 18 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002300069.1 | 0 | 1 | 386 | 1 | 403 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002322215.1 | 0 | 20 | 386 | 19 | 403 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526952.1 | 0 | 1 | 386 | 1 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 56 | 378 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 56 | 378 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.0000000000001 | 115 | 275 | 50 | 200 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 0.000000000004 | 118 | 275 | 135 | 303 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 2bsp_A | 0.00000000001 | 118 | 275 | 135 | 303 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FG606120 | 337 | 25 | 343 | 0 |
| DY272271 | 331 | 17 | 329 | 0 |
| HO778688 | 384 | 24 | 387 | 0 |
| DY278910 | 338 | 17 | 336 | 0 |
| CV264393 | 269 | 17 | 275 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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