Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_9.114 |
Family | GH28 |
Protein Properties | Length: 458 Molecular Weight: 49674.8 Isoelectric Point: 5.7979 |
Chromosome | Chromosome/Scaffold: 9 Start: 594294 End: 597654 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 418 | 0 |
DKGGAQLYVPPGRWLTGSFNLTSHLTLFLARGAVIFGSQNPSHWEVIEPLPSYGRGIELPGPRYQSLISGYMLRDVVVTGDNGTIDGQGSIWWDWFNSHS LNYSRPHLVEFTLSENIVVSNLTFLNAPAYNIHPVYCSNVHVENVSIYAPPESPYTVGIVPDSSDHVCIEDSSISIGHDAISLKSGWDEYGIAYGRPTTN VHIRRLHLRSSSGSSIAFGSEMSGGISNVEVHQVHLYNSPTGIEFRTTRGRGGYVKQIIISNAELENIVTAIVANGNSGSHPDDKFDPDALPVLDHITLQ NMIGTNITLAGNLTGIEESPFTSIHLSNISLSITSGTSISWICSYV |
Full Sequence |
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Protein Sequence Length: 458 Download |
MKMPVAFFLL LALSNTVFKV NGEGGNRQCD YKFKIEPRPH SVSILEFGAV GDGKTLNTLA 60 FQNAIFYLKS FADKGGAQLY VPPGRWLTGS FNLTSHLTLF LARGAVIFGS QNPSHWEVIE 120 PLPSYGRGIE LPGPRYQSLI SGYMLRDVVV TGDNGTIDGQ GSIWWDWFNS HSLNYSRPHL 180 VEFTLSENIV VSNLTFLNAP AYNIHPVYCS NVHVENVSIY APPESPYTVG IVPDSSDHVC 240 IEDSSISIGH DAISLKSGWD EYGIAYGRPT TNVHIRRLHL RSSSGSSIAF GSEMSGGISN 300 VEVHQVHLYN SPTGIEFRTT RGRGGYVKQI IISNAELENI VTAIVANGNS GSHPDDKFDP 360 DALPVLDHIT LQNMIGTNIT LAGNLTGIEE SPFTSIHLSN ISLSITSGTS ISWICSYVSG 420 FSESVSPEPC PDLESSYSKS SLPFLSILNY TGTATVS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 9.0e-14 | 40 | 265 | 238 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 5.0e-18 | 147 | 377 | 237 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 4.0e-19 | 40 | 398 | 364 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 4.0e-24 | 39 | 345 | 319 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 1.0e-40 | 42 | 354 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 14 | 431 | 12 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 1 | 431 | 1 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 19 | 438 | 16 | 434 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 1 | 436 | 1 | 434 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 3 | 448 | 1 | 443 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9e-35 | 40 | 417 | 26 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9e-35 | 40 | 417 | 26 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9e-35 | 40 | 417 | 26 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9e-35 | 40 | 417 | 26 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000008 | 86 | 345 | 52 | 309 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797483 | 398 | 35 | 432 | 0 |
HO797919 | 364 | 35 | 398 | 0 |
DY263658 | 331 | 1 | 331 | 0 |
DW501410 | 255 | 17 | 271 | 0 |
FC882641 | 262 | 1 | 262 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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