| Basic Information | |
|---|---|
| Species | Carica papaya |
| Cazyme ID | evm.model.supercontig_92.98 |
| Family | PL1 |
| Protein Properties | Length: 471 Molecular Weight: 52079.6 Isoelectric Point: 6.1188 |
| Chromosome | Chromosome/Scaffold: 92 Start: 772774 End: 774762 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 141 | 340 | 0 |
| IVFPSNMLIRLKQELIFNSYKTLDGRGANVHIVGGGCITLQYITNVIIHNIHIHHCVESGNANVRSSPSHYGWRTKSDGDGISIFGSKDIWIDHCSLSRC KDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 471 Download |
| MFQTTCIVFF FSLLCSFSQT ASAIFNISLP TPHPNPEQVV QDVHRRVNAS LTRRQMLQYT 60 QEDQQSSCLT GNPIDDCWKC DPNWPNDRQR LADCAIGFGQ YAMGGKGGEY YIVTDSSDDD 120 AVNPKPGTLR YAVIQPQPLW IVFPSNMLIR LKQELIFNSY KTLDGRGANV HIVGGGCITL 180 QYITNVIIHN IHIHHCVESG NANVRSSPSH YGWRTKSDGD GISIFGSKDI WIDHCSLSRC 240 KDGLIDAVMG STGITISNNY FSHHNEVMLL GHSDDYLPDS GMQVTIAFNH FGEKLVQRMP 300 RCRLGYIHVV NNDFTQWEMY AIGGSGNPTI NSQGNRYTAP SNPYAKEVTK RVETGEGEWK 360 DWNWRSEGDI MVNGAFFVAS GQGVEVKYEK AYSVEPKSAV LIDLLIMHSG VLGVGGRGNN 420 LGMWSTGPND GHHGLPADDD YTDDMAASTH SSIPSPIFLV SAFACFILFL * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-22 | 104 | 343 | 258 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-63 | 152 | 337 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-71 | 146 | 341 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61400.1 | 0 | 1 | 469 | 1 | 473 | pectate lyase-like protein [Arabidopsis thaliana] |
| EMBL | CAB64222.1 | 0 | 29 | 469 | 11 | 454 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_566979.1 | 0 | 1 | 469 | 2 | 474 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002265853.1 | 0 | 1 | 426 | 115 | 537 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002519460.1 | 0 | 23 | 469 | 22 | 474 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 72 | 400 | 2 | 335 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 72 | 400 | 2 | 335 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-17 | 91 | 337 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000003 | 165 | 312 | 138 | 299 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.00000000000007 | 162 | 312 | 151 | 314 | A Chain A, Bacillus Subtilis Pectate Lyase |
