y
Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a002454m |
Family | PL4 |
Protein Properties | Length: 673 Molecular Weight: 75487.7 Isoelectric Point: 9.3315 |
Chromosome | Chromosome/Scaffold: 3 Start: 2278773 End: 2283472 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 44 | 654 | 0 |
HAGAGVHLLQQNHTVSLTNGIVNVLLTIPDGNVISVTYKGGDNLLETQNKENDRGYWDLIWNKPGAPTSMDKLEGTSYKIIVQNNDQTEISFTRTWAVGS ARMPLNIDKRFVMLKDSPGFYTYTVLERLKGWPAFDIQEGRFLFKLQENKFHYMAMSDDRQRVMPMPVDRIPGHGQPLDYPEAVLLTNPTNPQLKGEVDD KYLYSCDNKDNKVHGWVSSDQGVGFWMITPSNEFRTGGPLKQDLTSHVGPTLLSMFISTHYAGEDLALKFQTGDYWKKVLGPVFVYLNSDPSAKTNPSVL WNDAKQRMQKEVSSWPYNFPLSVDFLKSNQRGAVKGQLLVHDWYKNKMAEPGASAYVGLAPQGGPGSWQFENKGYQFWTQADQHGNFAITNVVPGTYSLF AWVPGFVGDYKHASDITITPGSNIQATNVVFVPPRKGATLWEIGVPDRTAAEFFIPDPNPSFKTYPYRAPVEKFRQYGLWARYKDIHPVTDQVYTVGLSD YKKDWFFAHVPKNVGPRQFAATTWQIIFDLKSIAKGSYTLQLALASANAAEVQVRVNNPNSAALFTTRLIGKDNAIARHGIHGLYHLFSIDIPGTQLVVG KNTIFLTQARS |
Full Sequence |
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Protein Sequence Length: 673 Download |
MGKSGLNSIF SWQLVAIVQL FFLLIATHSH NSDRHKHGKG RRSHAGAGVH LLQQNHTVSL 60 TNGIVNVLLT IPDGNVISVT YKGGDNLLET QNKENDRGYW DLIWNKPGAP TSMDKLEGTS 120 YKIIVQNNDQ TEISFTRTWA VGSARMPLNI DKRFVMLKDS PGFYTYTVLE RLKGWPAFDI 180 QEGRFLFKLQ ENKFHYMAMS DDRQRVMPMP VDRIPGHGQP LDYPEAVLLT NPTNPQLKGE 240 VDDKYLYSCD NKDNKVHGWV SSDQGVGFWM ITPSNEFRTG GPLKQDLTSH VGPTLLSMFI 300 STHYAGEDLA LKFQTGDYWK KVLGPVFVYL NSDPSAKTNP SVLWNDAKQR MQKEVSSWPY 360 NFPLSVDFLK SNQRGAVKGQ LLVHDWYKNK MAEPGASAYV GLAPQGGPGS WQFENKGYQF 420 WTQADQHGNF AITNVVPGTY SLFAWVPGFV GDYKHASDIT ITPGSNIQAT NVVFVPPRKG 480 ATLWEIGVPD RTAAEFFIPD PNPSFKTYPY RAPVEKFRQY GLWARYKDIH PVTDQVYTVG 540 LSDYKKDWFF AHVPKNVGPR QFAATTWQII FDLKSIAKGS YTLQLALASA NAAEVQVRVN 600 NPNSAALFTT RLIGKDNAIA RHGIHGLYHL FSIDIPGTQL VVGKNTIFLT QARSISPFCE 660 VMYDYIRLEG PA* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.002 | 422 | 475 | 54 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 1.0e-29 | 373 | 468 | 96 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-49 | 484 | 669 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 5.0e-70 | 57 | 338 | 288 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-79 | 15 | 241 | 228 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172460.6 | 0 | 60 | 672 | 1 | 617 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 13 | 671 | 11 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527245.1 | 0 | 58 | 672 | 2 | 619 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 48 | 671 | 5 | 633 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 48 | 671 | 5 | 634 | lyase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3njx_A | 0.001 | 415 | 649 | 279 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 1nkg_A | 0.001 | 415 | 649 | 279 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
PDB | 3njv_A | 0.002 | 415 | 649 | 279 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
PDB | 2xhn_B | 0.002 | 415 | 649 | 279 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 2xhn_A | 0.002 | 415 | 649 | 279 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |