| Basic Information | |
|---|---|
| Species | Mimulus guttatus |
| Cazyme ID | mgv1a002710m |
| Family | PL4 |
| Protein Properties | Length: 645 Molecular Weight: 72905 Isoelectric Point: 5.0114 |
| Chromosome | Chromosome/Scaffold: 35 Start: 888220 End: 894154 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 6 | 626 | 0 |
| VRLNVQEHHVVIDNGIVEVALSNPEGIVTGIRYNGVDNLLEVLNDETNRGYWDVVWNAIDGSGKVAGGVFEVIKATKFEVITESEEKVEVSFSRPWDPSL ENKLVPLNIDKRFVVVRGCSGLYSYAVYEHVGSPEWPAFNLGETRIAFKLRKDRFQYMAVADNRQRYMPLPDDRLPGRGQPLAYPEAVLLVNPVDPRLRG EVDDKYQYSCDNKDIKVHGWISMNPQPAVGFWQITPSDEFRSGGPLKQNLTSHVGPTSLSVFLSAHYAGDDLVPKFGKGEAWKKVFGPVFIYLNSAMDGE DPLTLWDDAKRQMLVQVESWPYSFLASEDFQSANERGNLSGKLLVSDRYVSGDYIPASGAYVGLAPPGDVGSWQRECKGYQFWTRADEMGYFTINNVRSG NYNLNAWVPGFIGDYQNEVAITITSGCGIYMGEIVYEPPRDGPTLWEIGIPDRSAAEYYVPDPDPKYINKLYLNHPDRFRQYGLWDRYAELYPHEDLVYT VGKSDYTKDWFFAQVNRKKEDNTYQGTTWQIKFTLENLNRNGIYKLRVALASASLAELQVRVNNPKANRPLFSSGLIGRDNSIARHGIHGLHWLYNIEIN GDLLVEGDNTIYLSQPRSQSP | |||
| Full Sequence |
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| Protein Sequence Length: 645 Download |
| MPPIGVRLNV QEHHVVIDNG IVEVALSNPE GIVTGIRYNG VDNLLEVLND ETNRGYWDVV 60 WNAIDGSGKV AGGVFEVIKA TKFEVITESE EKVEVSFSRP WDPSLENKLV PLNIDKRFVV 120 VRGCSGLYSY AVYEHVGSPE WPAFNLGETR IAFKLRKDRF QYMAVADNRQ RYMPLPDDRL 180 PGRGQPLAYP EAVLLVNPVD PRLRGEVDDK YQYSCDNKDI KVHGWISMNP QPAVGFWQIT 240 PSDEFRSGGP LKQNLTSHVG PTSLSVFLSA HYAGDDLVPK FGKGEAWKKV FGPVFIYLNS 300 AMDGEDPLTL WDDAKRQMLV QVESWPYSFL ASEDFQSANE RGNLSGKLLV SDRYVSGDYI 360 PASGAYVGLA PPGDVGSWQR ECKGYQFWTR ADEMGYFTIN NVRSGNYNLN AWVPGFIGDY 420 QNEVAITITS GCGIYMGEIV YEPPRDGPTL WEIGIPDRSA AEYYVPDPDP KYINKLYLNH 480 PDRFRQYGLW DRYAELYPHE DLVYTVGKSD YTKDWFFAQV NRKKEDNTYQ GTTWQIKFTL 540 ENLNRNGIYK LRVALASASL AELQVRVNNP KANRPLFSSG LIGRDNSIAR HGIHGLHWLY 600 NIEINGDLLV EGDNTIYLSQ PRSQSPFQGL MYDYIRLEAP GDFN* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 4.0e-30 | 340 | 439 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 1.0e-52 | 451 | 638 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 7.0e-75 | 14 | 301 | 290 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 1.0e-93 | 1 | 207 | 207 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI19298.1 | 0 | 1 | 640 | 1 | 644 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002285626.1 | 0 | 17 | 640 | 1 | 615 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002301112.1 | 0 | 17 | 639 | 1 | 613 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527352.1 | 0 | 5 | 640 | 5 | 631 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527353.1 | 0 | 1 | 640 | 1 | 633 | lyase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GW864372 | 313 | 151 | 463 | 0 |
| EH713128 | 270 | 79 | 348 | 0 |
| EL409069 | 278 | 356 | 632 | 0 |
| EH718714 | 263 | 73 | 335 | 0 |
| DY922281 | 278 | 280 | 556 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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