| Basic Information | |
|---|---|
| Species | Mimulus guttatus |
| Cazyme ID | mgv1a002779m |
| Family | PL4 |
| Protein Properties | Length: 639 Molecular Weight: 72114.1 Isoelectric Point: 4.9101 |
| Chromosome | Chromosome/Scaffold: 2 Start: 2752089 End: 2755548 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 6 | 621 | 0 |
| TKLRLHIQNHHVVLENGILKVTISKPGGIVTSIEYNNIDNLLEVSNDESNRGYWDLVWSPPGSTGTTGTFQVIHATHFKVVVKTDEQIELSFSITWDTSL QGKLAPLNIDKRFVMLRGASGFYTYAIYEHLEAWPGFNLDETRTVFKLSKDKFKYMAMADNRQRYMPLPDDRLPNRSQPLEYPEAVLLVNPIEPEFKGEV DDKYQYSGENKDVKVHGWICMEHGVGFWQITPSNEFRTGGPTKQDLTSHVGPITLAMFVSAHYGGEDVVLKFGEGESWKKVFGPVFFYLNSAAQDDDITL SLWEDAKRQASEQVESWPYSFPASEDFPKVEERGNVTGRLLIRDRCMSDDCIMGNGAYIGLAPPGEVGSWEREGKGYQFWTRADETGNFTIGNIRAGNYN LYAWMPGFIGDYKYEDSISIFPGCNIDTGELVYEPPRDGPTLWEIGIPDRSAGEFYIPDPNPKLVNKLYVDHPDRFRQYGLWERYAELYPDGDLVYTVGE SNYATDWFFAQVNRKTVKNTYKATTWQIKFKLDAVEPSGTYKLRLALASAAQAELQVRVNNPDRNIPAIFSTGLIGKDNAIGRHGIHGLYWLFSVEILGS SLVTGNNTIYLTQADA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 639 Download |
| MSSPATKLRL HIQNHHVVLE NGILKVTISK PGGIVTSIEY NNIDNLLEVS NDESNRGYWD 60 LVWSPPGSTG TTGTFQVIHA THFKVVVKTD EQIELSFSIT WDTSLQGKLA PLNIDKRFVM 120 LRGASGFYTY AIYEHLEAWP GFNLDETRTV FKLSKDKFKY MAMADNRQRY MPLPDDRLPN 180 RSQPLEYPEA VLLVNPIEPE FKGEVDDKYQ YSGENKDVKV HGWICMEHGV GFWQITPSNE 240 FRTGGPTKQD LTSHVGPITL AMFVSAHYGG EDVVLKFGEG ESWKKVFGPV FFYLNSAAQD 300 DDITLSLWED AKRQASEQVE SWPYSFPASE DFPKVEERGN VTGRLLIRDR CMSDDCIMGN 360 GAYIGLAPPG EVGSWEREGK GYQFWTRADE TGNFTIGNIR AGNYNLYAWM PGFIGDYKYE 420 DSISIFPGCN IDTGELVYEP PRDGPTLWEI GIPDRSAGEF YIPDPNPKLV NKLYVDHPDR 480 FRQYGLWERY AELYPDGDLV YTVGESNYAT DWFFAQVNRK TVKNTYKATT WQIKFKLDAV 540 EPSGTYKLRL ALASAAQAEL QVRVNNPDRN IPAIFSTGLI GKDNAIGRHG IHGLYWLFSV 600 EILGSSLVTG NNTIYLTQAD ATGPLQGIMY DYIRFEGI* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 3.0e-30 | 337 | 436 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 1.0e-47 | 448 | 636 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 3.0e-71 | 8 | 303 | 299 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 8.0e-89 | 9 | 205 | 197 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI19298.1 | 0 | 8 | 637 | 6 | 643 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002285626.1 | 0 | 19 | 637 | 1 | 614 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002301112.1 | 0 | 19 | 637 | 1 | 613 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527353.1 | 0 | 4 | 636 | 2 | 631 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527357.1 | 0 | 1 | 637 | 1 | 633 | lyase, putative [Ricinus communis] |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY293973 | 348 | 5 | 350 | 0 |
| DW479599 | 293 | 4 | 296 | 0 |
| DW479600 | 295 | 4 | 298 | 0 |
| DT552229 | 293 | 19 | 311 | 0 |
| FC896579 | 279 | 76 | 352 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
