| Basic Information | |
|---|---|
| Species | Mimulus guttatus |
| Cazyme ID | mgv1a002827m |
| Family | PL4 |
| Protein Properties | Length: 635 Molecular Weight: 73596.1 Isoelectric Point: 9.6918 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2357306 End: 2360749 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 9 | 613 | 0 |
| SMFRVDIDNGIVKLTLTKPTGLMAGLAYKGVKNILERRNKETQRGYWDIMWSRPDQHKKSRFDTMQATRFRVIEQTEDQIEVSFSSTWRVSHGENLVPLN IDRRFIILRGVSGFYSYSIFEHEEGWPALNIDEARIAFKLDKDMFRYMAISDKRQRIMPTATDRKRGHELSYREAVLLSNSTSNPRLKGEVDDKYQYSSD NKDSHVHGWISNRPHVGFWVITPSDEFRAAGPVKPDLTSHAGPTSLAVFFSDHYAGANYGIRLRDGQPWKKVFGPVFVYVNSDSGNNHTTLWEDAKRKMS EETEKWPYDFPKSKDYPHANERGTIRGRLLVRDRYIERDLMPAKSAYVGLARPGDVGSWQDDYEGYQFWTKTDETGYFTIRGVRPDTYNLYAWVPGIIGD FKHKNEVIVRKGNEIHIGEIIYDPPRNGPTIWEIGIPDRTASEFFIPDPAPGLMNKLYINNEKFRQYGLWDRYTDLYPNKDLIYTVGESDYRKDWFFAHV TRKINKKNYTGTTWQIQFDVRKVITTASYTLRIALASANFAEIQVRVNNPPARRPLFSTGRIGKDNAVARHGIHGRYYLYGVSLPGFQLQNGRNIIYLRQ SRGLT | |||
| Full Sequence |
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| Protein Sequence Length: 635 Download |
| MARLLRSTSM FRVDIDNGIV KLTLTKPTGL MAGLAYKGVK NILERRNKET QRGYWDIMWS 60 RPDQHKKSRF DTMQATRFRV IEQTEDQIEV SFSSTWRVSH GENLVPLNID RRFIILRGVS 120 GFYSYSIFEH EEGWPALNID EARIAFKLDK DMFRYMAISD KRQRIMPTAT DRKRGHELSY 180 REAVLLSNST SNPRLKGEVD DKYQYSSDNK DSHVHGWISN RPHVGFWVIT PSDEFRAAGP 240 VKPDLTSHAG PTSLAVFFSD HYAGANYGIR LRDGQPWKKV FGPVFVYVNS DSGNNHTTLW 300 EDAKRKMSEE TEKWPYDFPK SKDYPHANER GTIRGRLLVR DRYIERDLMP AKSAYVGLAR 360 PGDVGSWQDD YEGYQFWTKT DETGYFTIRG VRPDTYNLYA WVPGIIGDFK HKNEVIVRKG 420 NEIHIGEIIY DPPRNGPTIW EIGIPDRTAS EFFIPDPAPG LMNKLYINNE KFRQYGLWDR 480 YTDLYPNKDL IYTVGESDYR KDWFFAHVTR KINKKNYTGT TWQIQFDVRK VITTASYTLR 540 IALASANFAE IQVRVNNPPA RRPLFSTGRI GKDNAVARHG IHGRYYLYGV SLPGFQLQNG 600 RNIIYLRQSR GLTPFVGVMY DYIRLEGPPD EDYY* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13620 | CarboxypepD_reg | 0.005 | 378 | 404 | 27 | + Carboxypeptidase regulatory-like domain. | ||
| cd10316 | RGL4_M | 1.0e-28 | 329 | 428 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 2.0e-49 | 440 | 626 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 1.0e-61 | 7 | 292 | 296 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-73 | 6 | 199 | 196 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172462.2 | 0 | 13 | 629 | 58 | 674 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002306520.1 | 0 | 15 | 629 | 1 | 616 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002308510.1 | 0 | 12 | 628 | 56 | 671 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527229.1 | 0 | 12 | 633 | 53 | 672 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527245.1 | 0 | 13 | 630 | 2 | 620 | lyase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GR159220 | 235 | 266 | 500 | 0 |
| DY969340 | 321 | 229 | 546 | 0 |
| GW864372 | 312 | 144 | 452 | 0 |
| GO374104 | 317 | 322 | 632 | 0 |
| GO374104 | 126 | 261 | 379 | 5.1 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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