| Basic Information | |
|---|---|
| Species | Mimulus guttatus |
| Cazyme ID | mgv1a004469m |
| Family | GH28 |
| Protein Properties | Length: 526 Molecular Weight: 56899.9 Isoelectric Point: 5.9538 |
| Chromosome | Chromosome/Scaffold: 39 Start: 835330 End: 838387 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 133 | 478 | 0 |
| AAACKIEASIVNVPAEYVFLVGPISFSGPYCQYNIVFQLDGTIVAPTSPSQWGSGILQWLEFTKLVGLTIKGSGTIDGNGAAWWQSSNDDNDPLDDQSKL IVPLNDTTEQNPRIHEDSWLGSKLPSIKPTALRFYGSYNVTVTGITIQNSPQCHLKFDNCVGVSVYNFTVSSPGDSPNTDGIHLQNSKDVLIRSSDLACG DDCVSIQTGCTNIYIHDVNCGPGHGISIGSLGKDNTKACVSNITVRDVFMQNTMNGVRIKTWQGGLGSVQGVQFSNIQVSEVQIPIVIDQYYCDKGKCRN QTSAVSLSGINYENIRGTYTVKPVHFACSDNMPCTDVTLANIQLDP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 526 Download |
| MGCLGNFKNL TFTIMVVLLV LWFSDMETCN ARKTGGRHYR QSSRSVGVSL SKNTGRNHHH 60 SNGGGKSKQK APSPKSPPPP AAGPVETPPP TNIPPPDKSE ENAPDPTVFD VLDFGARGDG 120 TTDDTQAFRA AWAAACKIEA SIVNVPAEYV FLVGPISFSG PYCQYNIVFQ LDGTIVAPTS 180 PSQWGSGILQ WLEFTKLVGL TIKGSGTIDG NGAAWWQSSN DDNDPLDDQS KLIVPLNDTT 240 EQNPRIHEDS WLGSKLPSIK PTALRFYGSY NVTVTGITIQ NSPQCHLKFD NCVGVSVYNF 300 TVSSPGDSPN TDGIHLQNSK DVLIRSSDLA CGDDCVSIQT GCTNIYIHDV NCGPGHGISI 360 GSLGKDNTKA CVSNITVRDV FMQNTMNGVR IKTWQGGLGS VQGVQFSNIQ VSEVQIPIVI 420 DQYYCDKGKC RNQTSAVSLS GINYENIRGT YTVKPVHFAC SDNMPCTDVT LANIQLDPLE 480 EGYHMYDPFC WQTFGQLYTP TVPPVQCLQI GKPSRNKIQG DNDSC* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN03010 | PLN03010 | 4.0e-79 | 109 | 476 | 373 | + polygalacturonase |
| PLN02188 | PLN02188 | 2.0e-80 | 107 | 477 | 375 | + polygalacturonase/glycoside hydrolase family protein |
| pfam00295 | Glyco_hydro_28 | 8.0e-86 | 138 | 476 | 340 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02218 | PLN02218 | 2.0e-90 | 106 | 476 | 375 | + polygalacturonase ADPG |
| PLN02793 | PLN02793 | 2.0e-108 | 108 | 504 | 402 | + Probable polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK95830.1 | 0 | 6 | 525 | 8 | 516 | unknown [Populus trichocarpa] |
| RefSeq | NP_564758.2 | 0 | 7 | 525 | 9 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002266600.1 | 0 | 6 | 525 | 5 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311773.1 | 0 | 6 | 525 | 8 | 517 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525361.1 | 0 | 6 | 525 | 5 | 519 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-24 | 255 | 427 | 145 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3jur_D | 4e-21 | 100 | 418 | 20 | 358 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4e-21 | 100 | 418 | 20 | 358 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4e-21 | 100 | 418 | 20 | 358 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4e-21 | 100 | 418 | 20 | 358 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
