Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a004737m |
Family | GH28 |
Protein Properties | Length: 513 Molecular Weight: 57172.9 Isoelectric Point: 8.6679 |
Chromosome | Chromosome/Scaffold: 48 Start: 643205 End: 646072 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 124 | 474 | 0 |
RNKGGGQLNVPPGNWLTAPFNLTSHMTLFLAEGAVILGIDDEKYWTLMPPLPSYGYGREHPGPRYGSLIHGQHLKDVVITGHNGTIDGQGQTWWTKYRQK LLNHTRGPLVQIMWSRDIVISNITLRNSPFWTLHPYDCKNVTIKNLTILAPVFQAPNTDGIDPDSCEDMVIEDCYISVGDDGVAIKSGWDQYGITYGRPS RNILIRNLVVRSNVSAGISIGSEMSGGVSNITVENVHIWNSRRAVRIKTAPGRGGYVRDITYRNLTFENCRVGIVIKTDYNEHPDGGFDPNAFPILKDIS YTSIHGEGVRVPVRIQGSSEIPVMNVTFRDMSVGVTNRKKHIFQCAYVQGS |
Full Sequence |
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Protein Sequence Length: 513 Download |
MVEPPSTPSS SPPCCWRRSW WASLYPTNNH HPHRRWIPSA TTFFSTNNTV LTALFLAFFF 60 TVFYWQKEAT AGGLAIFRRP FPSRQVPKLR HAAFNLTDFG GVGDGITLNT AAFERAVVAI 120 SKLRNKGGGQ LNVPPGNWLT APFNLTSHMT LFLAEGAVIL GIDDEKYWTL MPPLPSYGYG 180 REHPGPRYGS LIHGQHLKDV VITGHNGTID GQGQTWWTKY RQKLLNHTRG PLVQIMWSRD 240 IVISNITLRN SPFWTLHPYD CKNVTIKNLT ILAPVFQAPN TDGIDPDSCE DMVIEDCYIS 300 VGDDGVAIKS GWDQYGITYG RPSRNILIRN LVVRSNVSAG ISIGSEMSGG VSNITVENVH 360 IWNSRRAVRI KTAPGRGGYV RDITYRNLTF ENCRVGIVIK TDYNEHPDGG FDPNAFPILK 420 DISYTSIHGE GVRVPVRIQG SSEIPVMNVT FRDMSVGVTN RKKHIFQCAY VQGSVMGTVY 480 PAPCENLDLY DELGNLVRRS TSQNSSDIDY DF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-22 | 95 | 429 | 351 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-29 | 82 | 484 | 425 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-29 | 93 | 456 | 374 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-39 | 192 | 456 | 271 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 8.0e-69 | 92 | 416 | 364 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 28 | 512 | 13 | 509 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 28 | 512 | 13 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 34 | 512 | 21 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 34 | 512 | 21 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 34 | 512 | 19 | 494 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 87 | 453 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 87 | 453 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 87 | 453 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 87 | 453 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 6e-21 | 138 | 438 | 52 | 354 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |