Basic Information | |
---|---|
Species | Mimulus guttatus |
Cazyme ID | mgv1a004990m |
Family | PL1 |
Protein Properties | Length: 502 Molecular Weight: 54126.9 Isoelectric Point: 6.8919 |
Chromosome | Chromosome/Scaffold: 262 Start: 37149 End: 41621 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 133 | 339 | 0 |
VIQDEPLWIIFQSNMVIKLRHELIFNSYKTIDGRGARVHITGNGCITLQFVSHVIIHNVHVHDCSPSGHTIVRSSPSHAGWRGTSDGDGISLFTARNIWI DHCALSRCKDGLIDAIMGSTAITISNSYFSHHDEVMLLGHNDKYLLDSGMQVTIAFNHFGEGLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSARPTINS QGNRYTA |
Full Sequence |
---|
Protein Sequence Length: 502 Download |
MLPQTSILLF FSLFFLSLSS FISSTILFNL TLPHQHPYPE AVVQQVQRSI NASISRRRQL 60 LAPGQSQCLT GNPIDDCWRC DPDWAANRQR LADCGIGFGR GALGGKGGRF YVVTDSSDRD 120 AANPTPGTLR HAVIQDEPLW IIFQSNMVIK LRHELIFNSY KTIDGRGARV HITGNGCITL 180 QFVSHVIIHN VHVHDCSPSG HTIVRSSPSH AGWRGTSDGD GISLFTARNI WIDHCALSRC 240 KDGLIDAIMG STAITISNSY FSHHDEVMLL GHNDKYLLDS GMQVTIAFNH FGEGLVQRMP 300 RCRRGYIHVV NNDFTQWEMY AIGGSARPTI NSQGNRYTAP ADPNAKEVTK RVETDEGEWS 360 GWNWRTDGDI MVNGAFFVPS GEGLSMQYAK ASSVEPKSVG LIDQLTANAG VLGGPRDNSV 420 SISYGGEGSA AGATTANGGG GGSNDGGDGD YFGMIFGSGA APARLSPPTT TTMLLSLLII 480 LFLYTTTNHG GSLSLLPSFS L* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-21 | 159 | 335 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-58 | 142 | 337 | 205 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-65 | 146 | 340 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_196051.2 | 0 | 5 | 484 | 15 | 511 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 1 | 468 | 1 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 2 | 416 | 3 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519460.1 | 0 | 27 | 452 | 23 | 442 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002534016.1 | 0 | 2 | 468 | 4 | 465 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 72 | 412 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 72 | 412 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1jta_A | 0.00000000000003 | 184 | 410 | 114 | 357 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1jrg_B | 0.00000000000003 | 184 | 410 | 114 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
PDB | 1jrg_A | 0.00000000000003 | 184 | 410 | 114 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |