Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a005168m |
Family | GH28 |
Protein Properties | Length: 495 Molecular Weight: 55008.9 Isoelectric Point: 9.0186 |
Chromosome | Chromosome/Scaffold: 7 Start: 3280905 End: 3283802 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 105 | 452 | 0 |
RGGGQLNVEPGRWLTAPFNLTSHMTLFLAQNAVVLGVDDERYWPLMPPLPSYGYGRERAGPRYGSLIHGQNLRDVVITGHNGTINGQGQTWWTKYRKNQL NHTRGPLVQLMWSRDIHISDVTLRDSPFWTLHPYDCQNVTIRNVTILAPLSGAPNTDGIDPDSCENMLIEDCYISVGDDGIAIKSGWDQYGIAYGRPSSN ILIHNVIVRSMISAGVSIGSEMSGGVSNITIENLLVWNSKRGIRIKTSAGRGGYVRKINYRNLTLDNVRVGIVIKTDYNEHADEGFDPKALPIIEDISFD GVRGNGVRIPVRIYGSPEIPVRNVTFRDVLIGITYKKKRIFQCSFVQG |
Full Sequence |
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Protein Sequence Length: 495 Download |
MVESSRLLPG SSSFRIRPES RGLLQSIPAI LSSHRILLAV IWAVGFILII SWQKLAVDSF 60 WAPPPRPIPR LRPIVFNLTD FGGVGDGVTL NTKAFETAVS EIRRRGGGQL NVEPGRWLTA 120 PFNLTSHMTL FLAQNAVVLG VDDERYWPLM PPLPSYGYGR ERAGPRYGSL IHGQNLRDVV 180 ITGHNGTING QGQTWWTKYR KNQLNHTRGP LVQLMWSRDI HISDVTLRDS PFWTLHPYDC 240 QNVTIRNVTI LAPLSGAPNT DGIDPDSCEN MLIEDCYISV GDDGIAIKSG WDQYGIAYGR 300 PSSNILIHNV IVRSMISAGV SIGSEMSGGV SNITIENLLV WNSKRGIRIK TSAGRGGYVR 360 KINYRNLTLD NVRVGIVIKT DYNEHADEGF DPKALPIIED ISFDGVRGNG VRIPVRIYGS 420 PEIPVRNVTF RDVLIGITYK KKRIFQCSFV QGRVIGRIFP APCDDLDLYD EEGNLVRRSK 480 VTSLNNVTEV DYDS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 9.0e-21 | 76 | 452 | 391 | + polygalacturonase | ||
PLN02793 | PLN02793 | 6.0e-30 | 75 | 463 | 407 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-30 | 76 | 435 | 371 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 9.0e-38 | 171 | 442 | 279 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 5.0e-67 | 75 | 393 | 342 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 1 | 493 | 1 | 508 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 1 | 493 | 1 | 492 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 15 | 493 | 12 | 494 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 1 | 493 | 1 | 494 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 7 | 493 | 2 | 493 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 77 | 435 | 29 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 77 | 435 | 29 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 77 | 435 | 29 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 77 | 435 | 29 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 4e-20 | 117 | 435 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778855 | 452 | 1 | 446 | 0 |
CX102356 | 359 | 128 | 486 | 0 |
FN769574 | 315 | 147 | 461 | 0 |
FE707848 | 301 | 77 | 374 | 0 |
EX126330 | 298 | 138 | 435 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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