| Basic Information | |
|---|---|
| Species | Mimulus guttatus |
| Cazyme ID | mgv1a005515m |
| Family | GH28 |
| Protein Properties | Length: 482 Molecular Weight: 53626.5 Isoelectric Point: 6.4314 |
| Chromosome | Chromosome/Scaffold: 159 Start: 64765 End: 66774 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 80 | 397 | 0 |
| FPPGKYLTATLYLKTGVTLNISENATVLGGTRLEDYPEKQDRWYVVVAEDAADVGITGGGEINGQGLEFVKRFDERKNVMVSWNETGACLGDECRPRLVG FIGCRNVRVWDVSFNEPAYWCLHVVRCQNTSIHDVSIYGDFNSPNNDGIDIEDSNNTLITRCVIDTGDDAICPKTYTGPIYNLTATDCWIKTKSSAIKLG SASSYAFKHLIFDNITIVESHRGLGLQIRDGGNVSDITFSNINITTRYYDPSWWGRAEPIYVTTCPRDSNSKAGSISNLQFINITSVSENGVFLSGSKGG ILSDLKFVNVNLTYKRWT | |||
| Full Sequence |
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| Protein Sequence Length: 482 Download |
| MKSALLNIQS LLLLATTLLQ SHYATSRIPI IHSYPHLSLS VKDYGATGTG LQYDTVSIQS 60 AIDDCSSAFF LHRRRCLVKF PPGKYLTATL YLKTGVTLNI SENATVLGGT RLEDYPEKQD 120 RWYVVVAEDA ADVGITGGGE INGQGLEFVK RFDERKNVMV SWNETGACLG DECRPRLVGF 180 IGCRNVRVWD VSFNEPAYWC LHVVRCQNTS IHDVSIYGDF NSPNNDGIDI EDSNNTLITR 240 CVIDTGDDAI CPKTYTGPIY NLTATDCWIK TKSSAIKLGS ASSYAFKHLI FDNITIVESH 300 RGLGLQIRDG GNVSDITFSN INITTRYYDP SWWGRAEPIY VTTCPRDSNS KAGSISNLQF 360 INITSVSENG VFLSGSKGGI LSDLKFVNVN LTYKRWTNYT DGLVDYRPGC QGLVNHSTTA 420 GFVMEHIDGL VFENVNMRWS KEKTGLWNIP LDFRPSTVNN VSLLHFYSGL YRGENKDVEY 480 F* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 5.0e-7 | 183 | 376 | 206 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 8.0e-9 | 175 | 394 | 239 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 8.0e-10 | 162 | 371 | 223 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-13 | 175 | 393 | 234 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-40 | 39 | 326 | 322 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 19 | 471 | 15 | 471 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 19 | 471 | 15 | 471 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 1 | 469 | 1 | 465 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 1 | 469 | 1 | 460 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 26 | 472 | 1 | 443 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1e-17 | 14 | 318 | 6 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1e-17 | 14 | 318 | 6 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1e-17 | 14 | 318 | 6 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1e-17 | 14 | 318 | 6 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.00000000000009 | 39 | 320 | 157 | 484 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
