Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a005520m |
Family | PL1 |
Protein Properties | Length: 481 Molecular Weight: 51959.6 Isoelectric Point: 6.8681 |
Chromosome | Chromosome/Scaffold: 16 Start: 1137168 End: 1140327 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 135 | 342 | 0 |
VIQEEPLWITFQSNMVIKLKHELIVNNDKTIDGRGANVQITGNGCVTLQYVSNVIIHNVHVYNCMPSGNTNIRSSPTHVGWRGKSDGDGISIFGSRNIWI DHCALSHCTDGLIDIIMGSTGITISNNYFAQHNEVMLLGHDDNYLPDSGMQVTIAFNVFGKGLMQRMPRCRRGYVHVVNNDYFEWGMYAIGGSAGPTFNS EGNRYSAP |
Full Sequence |
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Protein Sequence Length: 481 Download |
MVPRTCIFLF TFLFLNLSIG ATTFFNLSLP HQHPHPESVV QELKRKVNAS ISLRRETLAA 60 PIINAAQSQC LTGNPIDDCW RCDPNWSSNR QRLADCSIGF GKGTTGGKGG RFYVVTDSSD 120 RDTVSPTPGT LRHAVIQEEP LWITFQSNMV IKLKHELIVN NDKTIDGRGA NVQITGNGCV 180 TLQYVSNVII HNVHVYNCMP SGNTNIRSSP THVGWRGKSD GDGISIFGSR NIWIDHCALS 240 HCTDGLIDII MGSTGITISN NYFAQHNEVM LLGHDDNYLP DSGMQVTIAF NVFGKGLMQR 300 MPRCRRGYVH VVNNDYFEWG MYAIGGSAGP TFNSEGNRYS APADPSVKEV TKREGVSEGE 360 WSNWNWRTEG DVLVNGAFFV PSGEGVSVKA SSVEAKSATL IDQLTMNAGV LGGQRDNSGS 420 VSNGGGTPRS GGNGGEDDFG MVFGSGAALL TPSLPPPTTV FLSLLIILIL YITTKHGGLQ 480 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-26 | 154 | 337 | 197 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-62 | 154 | 339 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-73 | 148 | 342 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_196051.2 | 0 | 5 | 476 | 15 | 514 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 1 | 452 | 1 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 8 | 415 | 8 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519460.1 | 0 | 23 | 437 | 22 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002534016.1 | 0 | 3 | 455 | 5 | 465 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 74 | 411 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 74 | 411 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-21 | 93 | 339 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000002 | 157 | 323 | 128 | 307 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000001 | 152 | 317 | 71 | 247 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |