Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a005582m |
Family | GH28 |
Protein Properties | Length: 479 Molecular Weight: 51706.4 Isoelectric Point: 5.0779 |
Chromosome | Chromosome/Scaffold: 113 Start: 276172 End: 278784 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 107 | 430 | 0 |
KAACQVENGVVLAPNDFTFVITSTIFSGPCQPGLVFQVDGVLATPDGPDCWPESDSHKQWIVFYRLDNMSFTGTGTIEGNGQKWWDLPCKPHKGPNGSTL PGPCDSPAMIRFFMSSNLVVSSLRIQNSPQFHMKFDGCQGVTIDKLSIFSPKLSPNTDGIHIENTKSVGIYNSLIHNGDDCISIGQGCADVEIDGVTCGP SHGISIGSLGVHNSRACVSNITVKNIIIRDSDNGLRIKTWQGGAGSVSGISFENIQMENVRNSVIIDQYYCLTKACRNETSAVYLTDVSYKNIKGTYDVR SPPIHFACSDTVACTNITMSEVEL |
Full Sequence |
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Protein Sequence Length: 479 Download |
MKILHFLLLS LLVTTLVLFH KASNVYARRH HHISNKQKNN KTLAPLISPV YAPARSPDYA 60 PSIPSDPSYG PAANDTTATS CIFDVTDFGA VGDGDTDDTA AFKSAWKAAC QVENGVVLAP 120 NDFTFVITST IFSGPCQPGL VFQVDGVLAT PDGPDCWPES DSHKQWIVFY RLDNMSFTGT 180 GTIEGNGQKW WDLPCKPHKG PNGSTLPGPC DSPAMIRFFM SSNLVVSSLR IQNSPQFHMK 240 FDGCQGVTID KLSIFSPKLS PNTDGIHIEN TKSVGIYNSL IHNGDDCISI GQGCADVEID 300 GVTCGPSHGI SIGSLGVHNS RACVSNITVK NIIIRDSDNG LRIKTWQGGA GSVSGISFEN 360 IQMENVRNSV IIDQYYCLTK ACRNETSAVY LTDVSYKNIK GTYDVRSPPI HFACSDTVAC 420 TNITMSEVEL LPYEGVLVDD PFCWNAYGVQ ETLTIPPIDC LQDGMPESLA ENVVSTGC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 7.0e-63 | 105 | 462 | 365 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 4.0e-64 | 104 | 430 | 333 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-81 | 103 | 430 | 333 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-86 | 124 | 430 | 308 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-97 | 103 | 457 | 358 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI25976.1 | 0 | 105 | 478 | 3 | 375 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_175244.1 | 0 | 1 | 466 | 1 | 463 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 18 | 478 | 17 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 478 | 1 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 478 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1czf_B | 2e-22 | 186 | 430 | 110 | 344 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 2e-22 | 186 | 430 | 110 | 344 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1bhe_A | 4e-22 | 166 | 376 | 102 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-21 | 183 | 430 | 80 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-21 | 183 | 430 | 80 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |