Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a005601m |
Family | GH28 |
Protein Properties | Length: 478 Molecular Weight: 51848.4 Isoelectric Point: 7.618 |
Chromosome | Chromosome/Scaffold: 51 Start: 958459 End: 960524 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 434 | 0 |
KVASDGGAQLIVPPGKWLTGSFNLTSHFTLYISKDAVLLASQDETEYPLIDPLPSYGVGRDGGKRFISLIFGTNLTDVVVTGGNGTIDGQGESWWKDFKS GKLKNTRPYLIEILYSRNVQISHLTLINSPSWHVHPTYCRDVIIESLTILAPIDSPNTDGINPDSCINTRIRDSYVVSGDDCIAVKSGWDQYGIKFGMPT QHLSIKRFTCISPDSAVIALGSEMSGGIQDVRAEDVHAINSQAGVRIKTAPGRGAYVKDIFVRNLRMETMQYVFWMTGAYGSHPDDGYDPKALPVVNNIN FKDMVGKNVSMVGNLAGIEGHPFTGLCLSNITAELAVKKKKKNIHPIFSSEKKKLPWNCT |
Full Sequence |
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Protein Sequence Length: 478 Download |
MCSYMNSLVL VCLVLGSLCV NVAESRDLNC LHEKVEYSAI NCRKHSALLT DFGGKGDGVT 60 SNTAAFKAAI ANLSKVASDG GAQLIVPPGK WLTGSFNLTS HFTLYISKDA VLLASQDETE 120 YPLIDPLPSY GVGRDGGKRF ISLIFGTNLT DVVVTGGNGT IDGQGESWWK DFKSGKLKNT 180 RPYLIEILYS RNVQISHLTL INSPSWHVHP TYCRDVIIES LTILAPIDSP NTDGINPDSC 240 INTRIRDSYV VSGDDCIAVK SGWDQYGIKF GMPTQHLSIK RFTCISPDSA VIALGSEMSG 300 GIQDVRAEDV HAINSQAGVR IKTAPGRGAY VKDIFVRNLR METMQYVFWM TGAYGSHPDD 360 GYDPKALPVV NNINFKDMVG KNVSMVGNLA GIEGHPFTGL CLSNITAELA VKKKKKNIHP 420 IFSSEKKKLP WNCTDISGVS SQVTPKACDL LPEKKVDCAY PTDILPIDKV VLKTCST* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 4.0e-24 | 51 | 342 | 309 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-28 | 49 | 405 | 366 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 4.0e-28 | 49 | 475 | 442 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-30 | 82 | 346 | 272 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 9.0e-56 | 49 | 342 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_190464.1 | 0 | 24 | 475 | 21 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002273177.1 | 0 | 36 | 477 | 22 | 452 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002278930.1 | 0 | 21 | 476 | 28 | 474 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327490.1 | 0 | 8 | 476 | 1 | 449 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 4 | 476 | 11 | 470 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 6.00036e-42 | 31 | 410 | 6 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 6.00036e-42 | 31 | 410 | 6 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 6.00036e-42 | 31 | 410 | 6 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 6.00036e-42 | 31 | 410 | 6 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 4e-18 | 91 | 386 | 52 | 341 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |