Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a006147m |
Family | GH28 |
Protein Properties | Length: 456 Molecular Weight: 49939.4 Isoelectric Point: 4.7271 |
Chromosome | Chromosome/Scaffold: 60 Start: 1241177 End: 1244055 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 399 | 0 |
DGGSMLFVPPGKWLTGSFNLTSHFTLFLHQDAVLLASQDENEWAVIEPLPSYGRGRDTEGGRYISLIFGTNLTDVIITGDNGTIDGQGETWWNKFHKGEL SYTRPYLIEIMYSENVQISNLTLVNSPSWNVHPVYCSNVIVQGLTILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDQYGISFAMPTKRL VIRRLTCISPFSAVIALGSEMSGGIEDVRAEEILAIDSESGIRIKTAVGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHPDNNYDPNALPLISNINYRD MVAENVTMAAKLEGISGDPFTGICISNVTIELAKKPKKVIWNCTDVEG |
Full Sequence |
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Protein Sequence Length: 456 Download |
MELPRILSQY CAISCRAHTA SLADFGGVGD GTTSNTRAFQ TAVDHLSQFE SDGGSMLFVP 60 PGKWLTGSFN LTSHFTLFLH QDAVLLASQD ENEWAVIEPL PSYGRGRDTE GGRYISLIFG 120 TNLTDVIITG DNGTIDGQGE TWWNKFHKGE LSYTRPYLIE IMYSENVQIS NLTLVNSPSW 180 NVHPVYCSNV IVQGLTILAP VTSPNTDGIN PDSCTNTRIE DCYIVSGDDC IAVKSGWDQY 240 GISFAMPTKR LVIRRLTCIS PFSAVIALGS EMSGGIEDVR AEEILAIDSE SGIRIKTAVG 300 RGGYVKDIYV RGMTMKTMKW AFWMTGNYGS HPDNNYDPNA LPLISNINYR DMVAENVTMA 360 AKLEGISGDP FTGICISNVT IELAKKPKKV IWNCTDVEGV SSGVVPLPCS QLPEVSAECN 420 FPAESLPIDN VEIQTCSYYR RKYSSSDNDH VLKHL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-22 | 25 | 402 | 395 | + polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-29 | 19 | 410 | 411 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 2.0e-29 | 22 | 425 | 425 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-31 | 118 | 397 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-55 | 20 | 316 | 322 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 5 | 438 | 46 | 485 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
RefSeq | XP_002278930.1 | 0 | 9 | 441 | 42 | 478 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 9 | 443 | 42 | 480 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303605.1 | 0 | 9 | 437 | 33 | 465 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 9 | 441 | 42 | 478 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.96182e-44 | 18 | 385 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.96182e-44 | 18 | 385 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.96182e-44 | 18 | 385 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.96182e-44 | 18 | 385 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000009 | 36 | 355 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY257045 | 327 | 63 | 389 | 0 |
EL471087 | 306 | 38 | 342 | 0 |
ES810566 | 340 | 107 | 441 | 0 |
CF512873 | 307 | 136 | 438 | 0 |
EY810524 | 296 | 48 | 343 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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