y
Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a006198m |
Family | PL1 |
Protein Properties | Length: 454 Molecular Weight: 50323.8 Isoelectric Point: 6.9741 |
Chromosome | Chromosome/Scaffold: 26 Start: 505082 End: 508702 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 167 | 371 | 0 |
IQDEPLWIVFQRDMVITLKQELIMNSFKTIDARGANVHIANGACITIQFITNVIIHGLHIHDCRPTGNAMVRSSPSHYGWRTMADGDAVSIFGSSHIWVD HNSMSNCADGLVDAVMGSTAITISNNYFTHHNEVILLGHSDSYMRDKQMQATIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQ GNRYL |
Full Sequence |
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Protein Sequence Length: 454 Download |
MGISIVWPSK KWLPLFTLLL FVLVVGALST VHGDETLNLR DFEKEELQNS PNSTMAEKLE 60 GIEEDVLNEH AVDDPEEVVR MVEMATRNST DRRRRLGYFS CGTGNPIDDC WRCDPNWHKN 120 RKRLADCGIG FGRNAIGGRD GRFYVVTDSG NDDPVTPKPG TLRYAVIQDE PLWIVFQRDM 180 VITLKQELIM NSFKTIDARG ANVHIANGAC ITIQFITNVI IHGLHIHDCR PTGNAMVRSS 240 PSHYGWRTMA DGDAVSIFGS SHIWVDHNSM SNCADGLVDA VMGSTAITIS NNYFTHHNEV 300 ILLGHSDSYM RDKQMQATIA YNHFGEGLIQ RMPRCRHGYF HVVNNDYTHW EMYAIGGSAE 360 PTINSQGNRY LAPVNPFAKE VTKRVETAES RWKGWNWRTE GDLMLNGAYF IPSGAGASGS 420 YARASSLGAK SSSMVASITS GAGALGCRRG RQC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-26 | 192 | 368 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-69 | 185 | 370 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-79 | 179 | 373 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF43573.1 | 0 | 22 | 453 | 1 | 425 | pectate lyase [Prunus persica] |
EMBL | CBI33346.1 | 0 | 9 | 453 | 4 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285639.1 | 0 | 9 | 453 | 6 | 432 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002297822.1 | 0 | 9 | 453 | 4 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002304700.1 | 0 | 40 | 453 | 40 | 452 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 105 | 445 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 105 | 445 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-16 | 174 | 372 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000002 | 253 | 347 | 190 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.000000000003 | 185 | 370 | 73 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |