Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a006305m |
Family | GH28 |
Protein Properties | Length: 450 Molecular Weight: 48385.9 Isoelectric Point: 6.4163 |
Chromosome | Chromosome/Scaffold: 158 Start: 106487 End: 109567 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 77 | 422 | 0 |
TGGTILYIPPGEYLTGPFNLTSHMTLYLARDAVIKATVDTKNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLYDVIITGENGTIDGQGDVWWNMWRQRTL EFTRPNIVELMNSKSIIISNVTFKNSPFWNIHPVYCSDVVVNYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDQYGISYNRPSQGI TIRRLTGSSPFAGIAVGSETSGGVADVIAEHINLSNMGIGIHLKTNIGRGGVIRNISISNVYMYKARKGIKISGDVGDHPDENYDRNALPVLKDVVIKDV SGDFVQQPGLIHGLKKAPFSGICLSNVSLGGVVGVRDSGWQCSDVS |
Full Sequence |
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Protein Sequence Length: 450 Download |
MHGGNFAIFS CFGVLLLVMN CSAPANADVA TCSGIVPMRI REDRISIEDF GGVGDGVTLN 60 TNAFRKAIYR IEHLNRTGGT ILYIPPGEYL TGPFNLTSHM TLYLARDAVI KATVDTKNWP 120 LIAPLPSYGR GRERPGGRYM SFIHGDGLYD VIITGENGTI DGQGDVWWNM WRQRTLEFTR 180 PNIVELMNSK SIIISNVTFK NSPFWNIHPV YCSDVVVNYV TILAPADSPN TDGIDPDSSS 240 NVCIEDSYIS TGDDLVAVKS GWDQYGISYN RPSQGITIRR LTGSSPFAGI AVGSETSGGV 300 ADVIAEHINL SNMGIGIHLK TNIGRGGVIR NISISNVYMY KARKGIKISG DVGDHPDENY 360 DRNALPVLKD VVIKDVSGDF VQQPGLIHGL KKAPFSGICL SNVSLGGVVG VRDSGWQCSD 420 VSGGAVRVSP LPCAELTSSQ QIGSCFSTL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 9.0e-23 | 50 | 348 | 312 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-24 | 45 | 434 | 408 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 4.0e-30 | 158 | 425 | 274 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-31 | 45 | 405 | 379 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 5.0e-54 | 27 | 364 | 376 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 8 | 449 | 10 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 8 | 447 | 8 | 445 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 8 | 449 | 10 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 38 | 445 | 1 | 408 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 11 | 445 | 12 | 442 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-36 | 39 | 407 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-36 | 39 | 407 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-36 | 39 | 407 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-36 | 39 | 407 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-21 | 89 | 422 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |