Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a006357m |
Family | GH28 |
Protein Properties | Length: 448 Molecular Weight: 48719.7 Isoelectric Point: 5.1737 |
Chromosome | Chromosome/Scaffold: 64 Start: 354909 End: 357006 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 82 | 416 | 0 |
WKQVCTSKNSVFLVPEGRVYLVNATRFKGPCAEKLVIQIDGTIVAPDDPKKWDTKNPRIWLDFYNLTKVYFQGDGIIDGSGSNWWAASCKKNKANPCKGA PTALTIDASSAVRVKGITIRNSQQMHFVISRCESVRVSGVEVSSPGDSPNTDGIHITGSTNVVLENCNIGTGDDCISIVNGSSNIKMKNINCGPGHGISI GSLGKNNSTGIVEKVVVDKAFLHDTTNGLRIKTWQGGSGYVRSIRYQNVRMDNVSNPIIIDQFYCDSPTTCQNQTSAVEISQIVYRDISGTSRTKEAMKF ACSDSVPCTKILLNNINLQRKNGTVETFCNSASGS |
Full Sequence |
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Protein Sequence Length: 448 Download |
MNKSAFLCFI IVLVLPIVSS TEKDYPDSFR IEVQDEEDDD FEVLGLLYSE SEHGNKVTVN 60 VDEFGAVGDG VSDDTQAFVN AWKQVCTSKN SVFLVPEGRV YLVNATRFKG PCAEKLVIQI 120 DGTIVAPDDP KKWDTKNPRI WLDFYNLTKV YFQGDGIIDG SGSNWWAASC KKNKANPCKG 180 APTALTIDAS SAVRVKGITI RNSQQMHFVI SRCESVRVSG VEVSSPGDSP NTDGIHITGS 240 TNVVLENCNI GTGDDCISIV NGSSNIKMKN INCGPGHGIS IGSLGKNNST GIVEKVVVDK 300 AFLHDTTNGL RIKTWQGGSG YVRSIRYQNV RMDNVSNPII IDQFYCDSPT TCQNQTSAVE 360 ISQIVYRDIS GTSRTKEAMK FACSDSVPCT KILLNNINLQ RKNGTVETFC NSASGSVSGN 420 VQPSADCLLS SDKEDERSRE YIVHTEL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 1.0e-82 | 60 | 428 | 371 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-88 | 91 | 399 | 309 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 7.0e-89 | 59 | 432 | 383 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-113 | 58 | 423 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-147 | 61 | 431 | 373 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_173760.2 | 0 | 51 | 432 | 59 | 440 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002299032.1 | 0 | 27 | 446 | 35 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317091.1 | 0 | 31 | 444 | 8 | 425 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328587.1 | 0 | 36 | 433 | 40 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525360.1 | 0 | 27 | 447 | 35 | 510 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-24 | 154 | 399 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 4e-18 | 131 | 400 | 56 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-18 | 131 | 400 | 56 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-18 | 131 | 400 | 56 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-18 | 131 | 400 | 56 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |