y
Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a006386m |
Family | PL1 |
Protein Properties | Length: 447 Molecular Weight: 49637.6 Isoelectric Point: 8.8453 |
Chromosome | Chromosome/Scaffold: 233 Start: 246817 End: 248753 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 155 | 362 | 0 |
AVIQTEPLWIIFSRSMVIRLSQELIMQSDKTIDGRGVRVHITGGAGITIQFVKNIIIHGILIHDIVPGNGGLIRDSVDHYGLRTRSDGDGISIYGAQDIW IDHVSMTKCSDGLIDAIMGSTGITISNGHFTDHNEAMLFGASDSHTQDVKMQITVAFNHFGKRMVQRMPRCRFGYIHVVNNDYTHWNMYAIGGSKNPIII SQGNRFIA |
Full Sequence |
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Protein Sequence Length: 447 Download |
MIHKMGLLFL LIAFASALPS ISANFADFDD YWLKRSVQAW NNTLQSYESH PAKIVSHLNL 60 HSKRALKEIK DINLVSNSSR RQLAHGYEGP CMATNPIDRC WRCQANWADN RFRLADCGLG 120 FGYKAKGGKG GRIYVVNDSS DGDMVNPKPG TLRHAVIQTE PLWIIFSRSM VIRLSQELIM 180 QSDKTIDGRG VRVHITGGAG ITIQFVKNII IHGILIHDIV PGNGGLIRDS VDHYGLRTRS 240 DGDGISIYGA QDIWIDHVSM TKCSDGLIDA IMGSTGITIS NGHFTDHNEA MLFGASDSHT 300 QDVKMQITVA FNHFGKRMVQ RMPRCRFGYI HVVNNDYTHW NMYAIGGSKN PIIISQGNRF 360 IAPPDNPFAK EVTKREYSPE SVWSQWIWRS EGDIFLRGAF FVQSGDATYT SKHPEKYDLI 420 QAASATQVGI MTKFAGALGC KVGQPC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 1.0e-8 | 24 | 83 | 60 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 3.0e-25 | 182 | 360 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-59 | 176 | 360 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-69 | 170 | 364 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 19 | 446 | 22 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 19 | 446 | 51 | 468 | unnamed protein product [Vitis vinifera] |
Swiss-Prot | P15722 | 0 | 4 | 446 | 7 | 449 | PEL59_SOLLC RecName: Full=Probable pectate lyase P59; Flags: Precursor |
RefSeq | XP_002311599.1 | 0 | 10 | 446 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 7 | 446 | 8 | 435 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 95 | 438 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 95 | 438 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-17 | 127 | 352 | 23 | 228 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000002 | 182 | 360 | 132 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000000008 | 180 | 363 | 146 | 349 | A Chain A, Bacillus Subtilis Pectate Lyase |