Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a006498m |
Family | PL1 |
Protein Properties | Length: 443 Molecular Weight: 49731.7 Isoelectric Point: 9.8392 |
Chromosome | Chromosome/Scaffold: 37 Start: 264400 End: 266999 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 152 | 360 | 0 |
AVIQSEPLWIIFARSMVIRLKQELIFASDKTVDGRGVRVRIAYGAGLTLQFVHNVIIHNIRIHNIVSTPGGMIRDAVDHIGLRTVSDGDGINVFSSNNIW IDHVSLSKGTDGLIDVIEGSTAITISNCKFNNHNTVMLLGAHDNSTKDTIMQVTVAFNRFGKGLVQRMPRCRWGFFHVINNDYSKWLMYAIGGSSNPTII SQGNRFKAS |
Full Sequence |
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Protein Sequence Length: 443 Download |
MAFGNNKSSI ILLLLSMIYF VTLIPKSHAA IAKYDDYLRK KANESFAESL KAFDPNPEKV 60 ADELNEQVGE TLVHENLSRR HLKEENDCKA TNPIDRCWRC DGDWSKNRKK LAECVRGFGH 120 RTTGGKDGRY YLVTDPSDDD MDKPKNGTLR HAVIQSEPLW IIFARSMVIR LKQELIFASD 180 KTVDGRGVRV RIAYGAGLTL QFVHNVIIHN IRIHNIVSTP GGMIRDAVDH IGLRTVSDGD 240 GINVFSSNNI WIDHVSLSKG TDGLIDVIEG STAITISNCK FNNHNTVMLL GAHDNSTKDT 300 IMQVTVAFNR FGKGLVQRMP RCRWGFFHVI NNDYSKWLMY AIGGSSNPTI ISQGNRFKAS 360 DNPFTKQVTK RESTESEWKK WQWRSEGDKF VNGAYFRESG PKVKHTISPL KEKNLIKFKP 420 GSYAGRLTRY AGALNCVAGK SC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 9.0e-8 | 31 | 82 | 53 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 7.0e-25 | 240 | 363 | 136 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-54 | 172 | 357 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-62 | 167 | 361 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 22 | 442 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 22 | 442 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270112.1 | 0 | 25 | 442 | 22 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 13 | 442 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 6 | 442 | 5 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 92 | 434 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 92 | 434 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-21 | 161 | 348 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.0000000000003 | 119 | 361 | 16 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.0000000000007 | 178 | 357 | 131 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |