Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a006554m |
Family | PL1 |
Protein Properties | Length: 440 Molecular Weight: 48271.7 Isoelectric Point: 8.409 |
Chromosome | Chromosome/Scaffold: 114 Start: 814440 End: 817729 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 150 | 355 | 0 |
VIQTQPLWILFKRDMVITLKQELIMNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWV DHNSLSNCADGLVDAVMGSTAITVSNNYFTHHNEVMLLGHSDSYMKDKQMQVTIAYNHFGEGLMQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINS QGNRYL |
Full Sequence |
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Protein Sequence Length: 440 Download |
MAASKKLVVS LLLSAVLFML LVGGVARFHR DETLKSSAME KEQSSTNATM AAKFEGIDDP 60 EEVVRMVEMA TRNSTERRKL GFFSCGTGNP IDDCWRCDPN WHKNRKRLAD CGIGFGRNAI 120 GGRDGRFYIV TDPGNDDPVN PRPGTLRYAV IQTQPLWILF KRDMVITLKQ ELIMNSFKTI 180 DGRGANVHIA NGGCITIQYV TNVIIHGLHI HDCKPTGNAM VRSSPSHYGW RTMADGDAIS 240 IFGSSHIWVD HNSLSNCADG LVDAVMGSTA ITVSNNYFTH HNEVMLLGHS DSYMKDKQMQ 300 VTIAYNHFGE GLMQRMPRCR HGYFHVVNND YTHWEMYAIG GSAEPTINSQ GNRYLAPVNP 360 FAKEVTKRVD TGEGQWKGWN WRSEGDLMLN GAYFTPSGAG ASASYARASS LGAKSSSMVG 420 TITSGAGVLG CKRGHQCSN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-28 | 176 | 352 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 9.0e-74 | 169 | 354 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-83 | 163 | 357 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACB12931.1 | 0 | 40 | 437 | 45 | 452 | pectate lyase 1-27 [Populus tremula x Populus tremuloides] |
EMBL | CBI33346.1 | 0 | 35 | 437 | 27 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285639.1 | 0 | 35 | 437 | 29 | 432 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002297822.1 | 0 | 1 | 437 | 1 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002304700.1 | 0 | 40 | 437 | 45 | 452 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 89 | 429 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 89 | 429 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-17 | 164 | 355 | 56 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 1e-16 | 179 | 331 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000003 | 179 | 331 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |