Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a007104m |
Family | GH28 |
Protein Properties | Length: 420 Molecular Weight: 44134.9 Isoelectric Point: 5.0439 |
Chromosome | Chromosome/Scaffold: 1 Start: 4307949 End: 4309930 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 78 | 405 | 0 |
RAACDSNGAGKVLIPAGNNFFSGEIVFAGPCAGQQAITIEIQGNMSALPDPSVYSGGAWIMVERAENIEVTGSGTINAHGEAAWQYADDNNHLAVSLVFQ GVGNCKLNNLNFVNSMGFHTKVTDSHDVTVTNLTITAPGKSPNTDGIHLSNATNVNITDSVIGTGDDCISIGPGSKNVVVSRITCGPGHGISIGSLGKRV DETDVQGITVSNCTLIGTTNGARIKTYHDSPELTASKITFVDLVMDQVKNPIIIDQHYDSKKKPKQSSVKISDTHFINIKGSTVSEIPIVLNCSSLVPCE GIELSDIDLVPFGTLRNLTSACSNAQTT |
Full Sequence |
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Protein Sequence Length: 420 Download |
MMANTIRESR VVVITKACLA ISVACMLMIN DSVECSSPVL SRRSLAGEVE TVFNVMDYGA 60 KADDDTTDNA PAFIKAWRAA CDSNGAGKVL IPAGNNFFSG EIVFAGPCAG QQAITIEIQG 120 NMSALPDPSV YSGGAWIMVE RAENIEVTGS GTINAHGEAA WQYADDNNHL AVSLVFQGVG 180 NCKLNNLNFV NSMGFHTKVT DSHDVTVTNL TITAPGKSPN TDGIHLSNAT NVNITDSVIG 240 TGDDCISIGP GSKNVVVSRI TCGPGHGISI GSLGKRVDET DVQGITVSNC TLIGTTNGAR 300 IKTYHDSPEL TASKITFVDL VMDQVKNPII IDQHYDSKKK PKQSSVKISD THFINIKGST 360 VSEIPIVLNC SSLVPCEGIE LSDIDLVPFG TLRNLTSACS NAQTTLKGTL NPAGPTQCI* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-70 | 53 | 386 | 341 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 5.0e-84 | 48 | 412 | 376 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-84 | 50 | 412 | 375 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-86 | 81 | 402 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-96 | 45 | 412 | 378 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG14416.1 | 0 | 19 | 412 | 7 | 398 | AF248538_1 NTS1 protein [Nicotiana tabacum] |
EMBL | CBI36886.1 | 0 | 42 | 412 | 34 | 411 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002301489.1 | 0 | 42 | 408 | 32 | 405 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314372.1 | 0 | 50 | 412 | 46 | 406 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002334010.1 | 0 | 50 | 412 | 44 | 404 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-16 | 135 | 339 | 101 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 8e-16 | 40 | 384 | 9 | 336 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 0.000000000000003 | 142 | 372 | 71 | 308 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_A | 0.000000000000003 | 142 | 372 | 71 | 308 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ia5_A | 0.000000000000003 | 142 | 372 | 71 | 308 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO982321 | 238 | 1 | 237 | 0 |
GR001426 | 238 | 1 | 237 | 0 |
GO992803 | 238 | 1 | 237 | 0 |
GR194535 | 258 | 60 | 317 | 0 |
GR109860 | 180 | 1 | 180 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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