Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a007235m |
Family | GH28 |
Protein Properties | Length: 415 Molecular Weight: 45000.6 Isoelectric Point: 7.7834 |
Chromosome | Chromosome/Scaffold: 396 Start: 10089 End: 12078 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 40 | 370 | 0 |
NKACSTDRSVLLVPQGRRYLVNATRFRGPCSDKFVIQIEGTIVAPDEPKSWDPKNQRNWLSFYNLTKVYFQGNGVIDGSGSKWWAASCKKNKTNPCRGAP TALTIDLSSAVRVKGLTIQNSQQMNFVISRSNSVRVIDVKVSSPEDSPNTDGIHITDSTTVLVQNCKIGTGDDCISIVNGSSNIKMKNIYCGPGHGISIG SLGKDNSTGIVEKIVLDKAFLRGATNGLRIKTWQGGSGYVRSVRYQDVRMEDVSNPIIIDQFYCDSPTSCQNQTSAVEISQIMYRNITGTSRSQKAMKFA CSDSVPCTHIVLNNINLQKSDGTVETYCNSA |
Full Sequence |
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Protein Sequence Length: 415 Download |
MDSVSWGSAH VNKVIVNVDG FGAVGDGVSD DTQAFVNAWN KACSTDRSVL LVPQGRRYLV 60 NATRFRGPCS DKFVIQIEGT IVAPDEPKSW DPKNQRNWLS FYNLTKVYFQ GNGVIDGSGS 120 KWWAASCKKN KTNPCRGAPT ALTIDLSSAV RVKGLTIQNS QQMNFVISRS NSVRVIDVKV 180 SSPEDSPNTD GIHITDSTTV LVQNCKIGTG DDCISIVNGS SNIKMKNIYC GPGHGISIGS 240 LGKDNSTGIV EKIVLDKAFL RGATNGLRIK TWQGGSGYVR SVRYQDVRME DVSNPIIIDQ 300 FYCDSPTSCQ NQTSAVEISQ IMYRNITGTS RSQKAMKFAC SDSVPCTHIV LNNINLQKSD 360 GTVETYCNSA AGFGYGYIQP SAECLSSSDK DATIIPNKEA DFIQSTEHLI HTEL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 3.0e-83 | 14 | 386 | 376 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-89 | 48 | 356 | 309 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 2.0e-91 | 16 | 388 | 381 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-115 | 16 | 368 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-141 | 13 | 388 | 378 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI28554.1 | 0 | 2 | 414 | 698 | 1111 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_173760.2 | 0 | 5 | 389 | 56 | 440 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002299032.1 | 0 | 1 | 414 | 48 | 469 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317091.1 | 0 | 1 | 414 | 19 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328587.1 | 0 | 5 | 395 | 53 | 443 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-19 | 111 | 302 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 4e-18 | 114 | 356 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-18 | 114 | 356 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-18 | 114 | 356 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-18 | 114 | 356 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE686036 | 253 | 2 | 254 | 0 |
EH685542 | 258 | 159 | 415 | 0 |
FP038137 | 219 | 90 | 308 | 0 |
EY181291 | 255 | 47 | 301 | 0 |
EV550328 | 224 | 52 | 275 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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