Basic Information | |
---|---|
Species | Mimulus guttatus |
Cazyme ID | mgv1a007314m |
Family | GH28 |
Protein Properties | Length: 412 Molecular Weight: 44004.5 Isoelectric Point: 8.5358 |
Chromosome | Chromosome/Scaffold: 127 Start: 619273 End: 621282 |
Description | polygalacturonase 4 |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 70 | 395 | 0 |
RAACTTVGAAKVLIPRGDFVAGEVVMAGPCTAQKPITIEIQGNLLAYDDMSVYTRGAWIMIEKVDGLVVTGGGTINGRGKEVWQYFTKGSPPLPVSLILQ SVQNVKMYNLNLVDSMGFHSKVTDSTNVAISNMKITAPGKSPNTDGCHMSSSRNINITDTVIGTGDDCISIGHGNYNILVARVTCGPGHGLSIGSLGKRP NETSMKGVTITNCTLVGTTNGARIKTYHASPQIEASSIYFQDIVMDRVKNPIIIDQHYDSKRKREPSKVKISDVHFRNIRGTSISAVSISLNCSSTFPCQ GIELSNIDLQPIAPIGPLRSSCSNAR |
Full Sequence |
---|
Protein Sequence Length: 412 Download |
MANSEGSREI LQACLVLGLL ALINVVRCDN YPDFQSRRSL IGETIFDVTK FGAKGDGITD 60 DAMAIIKAWR AACTTVGAAK VLIPRGDFVA GEVVMAGPCT AQKPITIEIQ GNLLAYDDMS 120 VYTRGAWIMI EKVDGLVVTG GGTINGRGKE VWQYFTKGSP PLPVSLILQS VQNVKMYNLN 180 LVDSMGFHSK VTDSTNVAIS NMKITAPGKS PNTDGCHMSS SRNINITDTV IGTGDDCISI 240 GHGNYNILVA RVTCGPGHGL SIGSLGKRPN ETSMKGVTIT NCTLVGTTNG ARIKTYHASP 300 QIEASSIYFQ DIVMDRVKNP IIIDQHYDSK RKREPSKVKI SDVHFRNIRG TSISAVSISL 360 NCSSTFPCQG IELSNIDLQP IAPIGPLRSS CSNARFFVTG KINPTAPASC V* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-79 | 46 | 379 | 341 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-88 | 37 | 404 | 379 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-89 | 32 | 410 | 392 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-90 | 73 | 394 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-110 | 42 | 404 | 372 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG14416.1 | 0 | 8 | 406 | 5 | 400 | AF248538_1 NTS1 protein [Nicotiana tabacum] |
EMBL | CBI36886.1 | 0 | 8 | 408 | 6 | 415 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002301488.1 | 0 | 63 | 404 | 2 | 350 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301489.1 | 0 | 10 | 404 | 3 | 410 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002336609.1 | 0 | 64 | 378 | 1 | 318 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-18 | 138 | 348 | 113 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000000002 | 61 | 393 | 7 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000002 | 61 | 393 | 7 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000002 | 61 | 393 | 7 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000000002 | 61 | 393 | 7 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |