Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a007521m |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 43349.1 Isoelectric Point: 8.9908 |
Chromosome | Chromosome/Scaffold: 75 Start: 388647 End: 391296 |
Description | polygalacturonase abscission zone A. thaliana |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 60 | 393 | 0 |
KEACSSSQDVNFVVPKSKTYLLKPLRFTGPCKSHITMEINGAILASDNRADYSKDNRHWLIFDRVDNLVVEGGGTINGNGNIWWQNSCKINKSKPCKSAP TALTFYKCTSLVVKNLKIQNAQQIHLSFEKCTNVQASNLVVNAPEKSPNTDGIHVTGTQNIQISSCIIGTGDDCISIVSGSKKVQATDITCGPGHGISIG SLGSGNSEEYVSDVVVNRAKLSGTTNGVRIKTWQGGSGSASNIKFQNIEMKNVKNPIIVDQNYCDQDGPCKQQASAVQVKNVVYQNIKGTSASKVAIDFD CSKSHPCQGIVLQNVNFVGADGAKSKAVCNNVNL |
Full Sequence |
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Protein Sequence Length: 405 Download |
MALSMMSFKK TKIIEARFSD FNNFSRRSLA ASVKTVDVLS FGAKGDGSTD DSKAFGNAWK 60 EACSSSQDVN FVVPKSKTYL LKPLRFTGPC KSHITMEING AILASDNRAD YSKDNRHWLI 120 FDRVDNLVVE GGGTINGNGN IWWQNSCKIN KSKPCKSAPT ALTFYKCTSL VVKNLKIQNA 180 QQIHLSFEKC TNVQASNLVV NAPEKSPNTD GIHVTGTQNI QISSCIIGTG DDCISIVSGS 240 KKVQATDITC GPGHGISIGS LGSGNSEEYV SDVVVNRAKL SGTTNGVRIK TWQGGSGSAS 300 NIKFQNIEMK NVKNPIIVDQ NYCDQDGPCK QQASAVQVKN VVYQNIKGTS ASKVAIDFDC 360 SKSHPCQGIV LQNVNFVGAD GAKSKAVCNN VNLQNSGTVI PQCP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-79 | 21 | 391 | 379 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-90 | 31 | 404 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 6.0e-108 | 63 | 391 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-124 | 25 | 401 | 378 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-149 | 7 | 403 | 401 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71160.1 | 0 | 27 | 404 | 82 | 456 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
GenBank | ACJ06505.1 | 0 | 11 | 404 | 45 | 441 | polygalacturonase [Diospyros kaki] |
GenBank | ACJ06506.1 | 0 | 11 | 404 | 45 | 441 | polygalacturonase [Diospyros kaki] |
GenBank | ACJ06507.1 | 0 | 11 | 404 | 45 | 441 | polygalacturonase [Diospyros kaki] |
Swiss-Prot | P35336 | 0 | 27 | 403 | 82 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-25 | 129 | 344 | 113 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-19 | 132 | 391 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-19 | 132 | 391 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-19 | 132 | 391 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-19 | 132 | 391 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EH756941 | 254 | 151 | 404 | 0 |
EE093402 | 256 | 111 | 366 | 0 |
EH767961 | 249 | 156 | 404 | 0 |
EY506367 | 289 | 33 | 321 | 0 |
EE091344 | 235 | 142 | 376 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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