y
Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a007538m |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 43762.1 Isoelectric Point: 7.9315 |
Chromosome | Chromosome/Scaffold: 122 Start: 79338 End: 81279 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 387 | 0 |
KEACEATNASKVLIPKGTWYLSQIRLVGPNKAPLELEVQGTVEANPDYTKLPQKDGQWITINYLDGFTISGGGVFDGKGEQAWKANDCHKNPNCPKLPIN LSLNFIKNAIIKDVTTKDSKNFHCNCISSQNVTFQRFTISAPGESINTDGIHIARVSNVKVLDSNIGTGDDCISIGDETTDLHIENVKCGPGHGISVGSM GKNPAEKDVTGITVKKCTFTGTSNGVRVKTWPSAPATLKISNLHFEDLTMNNVSYPVVIDQQYCPWNLCTKDKPSLIQISGLTVKNVRGTANTKEALLFS CSSSKPCQNVQISDIDLKYVNSIPANFTTVCENVKPT |
Full Sequence |
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Protein Sequence Length: 405 Download |
MEIKLFFSAV LLVFLPFLAY HAQAVTVFDI SKYGAKPGGE DISPVLAKVW KEACEATNAS 60 KVLIPKGTWY LSQIRLVGPN KAPLELEVQG TVEANPDYTK LPQKDGQWIT INYLDGFTIS 120 GGGVFDGKGE QAWKANDCHK NPNCPKLPIN LSLNFIKNAI IKDVTTKDSK NFHCNCISSQ 180 NVTFQRFTIS APGESINTDG IHIARVSNVK VLDSNIGTGD DCISIGDETT DLHIENVKCG 240 PGHGISVGSM GKNPAEKDVT GITVKKCTFT GTSNGVRVKT WPSAPATLKI SNLHFEDLTM 300 NNVSYPVVID QQYCPWNLCT KDKPSLIQIS GLTVKNVRGT ANTKEALLFS CSSSKPCQNV 360 QISDIDLKYV NSIPANFTTV CENVKPTVSG KQNPPICPPP VQAS* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 6.0e-71 | 27 | 397 | 379 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-75 | 23 | 368 | 352 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 6.0e-79 | 9 | 397 | 391 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-107 | 54 | 385 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-115 | 24 | 398 | 376 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PIR | 0 | 15 | 404 | 2 | 384 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
EMBL | CAA50335.1 | 0 | 15 | 404 | 2 | 384 | polygalacturonase [Nicotiana tabacum] |
Swiss-Prot | Q05967 | 0 | 1 | 404 | 3 | 395 | PGLR_TOBAC RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002329175.1 | 0 | 1 | 397 | 1 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-18 | 119 | 367 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000000003 | 118 | 384 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000003 | 118 | 384 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000003 | 118 | 384 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000003 | 118 | 384 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |