Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a007569m |
Family | PL1 |
Protein Properties | Length: 404 Molecular Weight: 44562.3 Isoelectric Point: 8.3613 |
Chromosome | Chromosome/Scaffold: 30 Start: 1108206 End: 1110390 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 120 | 322 | 0 |
EPLWITFARDMVIKLKQELMLNSFKTIDGRGASVHIAGGPCITIQYVTNVIVHGLNIHDCKQGGNAYVRDSPDHYGWRTLSDGDGVSIFGGSHVWVDHCS LSNCRDGLIDAIHGSTAITISNNYFTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNR FLA |
Full Sequence |
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Protein Sequence Length: 404 Download |
MNNHFFILML LPILIHLITP TFSSPLPHPE LVVQQVNEQI NVSRRSLGFL SCNTGNPIDD 60 CWRCDPDWEK NRKRLADCAI GFGKHAIGGR DGKFYTVTDS GDDAVNPKPG TLRYGVIQSE 120 PLWITFARDM VIKLKQELML NSFKTIDGRG ASVHIAGGPC ITIQYVTNVI VHGLNIHDCK 180 QGGNAYVRDS PDHYGWRTLS DGDGVSIFGG SHVWVDHCSL SNCRDGLIDA IHGSTAITIS 240 NNYFTHHNKV MLLGHSDSYT QDKNMQVTIA FNHFGEGLVQ RMPRCRHGYF HVVNNDYTHW 300 EMYAIGGSAS PTINSQGNRF LAPDRANNKE VTKHEDAPQS KWKNWNWRSE GDLLLNGAFF 360 TRSGAGSSSN YAKASSLSAR PSSLVGTITV GAGSLGCKKG RRC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 7.0e-28 | 142 | 320 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 8.0e-73 | 135 | 320 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-82 | 129 | 324 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB59066.1 | 0 | 24 | 403 | 29 | 409 | pectate lyase [Salix gilgiana] |
RefSeq | NP_564906.1 | 0 | 20 | 403 | 22 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002285340.1 | 0 | 23 | 403 | 22 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318694.1 | 0 | 19 | 403 | 16 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322215.1 | 0 | 19 | 403 | 16 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 56 | 393 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 56 | 393 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-18 | 130 | 321 | 56 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000009 | 184 | 394 | 120 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000009 | 184 | 394 | 120 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |