Basic Information | |
---|---|
Species | Mimulus guttatus |
Cazyme ID | mgv1a008057m |
Family | PL1 |
Protein Properties | Length: 387 Molecular Weight: 42198.9 Isoelectric Point: 8.4544 |
Chromosome | Chromosome/Scaffold: 24 Start: 1813905 End: 1815959 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 109 | 308 | 0 |
ITFARSMVIELGNELMVNSYKTIDGRGVKVEIANGPCITLQYVKHVIIHGISVHDCKPGNSGIVRNSPTHMGHRRGSDGDGIDIFASSDIWVDHCYLARC TDGLIDVIHASTSITISNNYFTQHDKVMLFGHEDNNLEDKSIKVTVVFNHFGPGLVQRMPRVRLGYAHVANNRYEQWEMYAIGGSANPTIFSEGNYFMAP |
Full Sequence |
---|
Protein Sequence Length: 387 Download |
MASLKQTLTT LIPSLIIILS TLVLIVDSSS TPSTYYNKVL NPIDSCWRSK SNWASNRQAL 60 ADCAVGFGKN AIGGKYGSIY VVTDPSDNPE TPKPGTLRYG AIQDKPLWIT FARSMVIELG 120 NELMVNSYKT IDGRGVKVEI ANGPCITLQY VKHVIIHGIS VHDCKPGNSG IVRNSPTHMG 180 HRRGSDGDGI DIFASSDIWV DHCYLARCTD GLIDVIHAST SITISNNYFT QHDKVMLFGH 240 EDNNLEDKSI KVTVVFNHFG PGLVQRMPRV RLGYAHVANN RYEQWEMYAI GGSANPTIFS 300 EGNYFMAPNN PGIKQVTKRE TSGWNNWKWR SSRDKFFNGA YFVPSGYGSC APGYTGAQSF 360 PVADGAMAPA LTANAGPLSC TANKPC* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 6.0e-28 | 122 | 346 | 237 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-59 | 122 | 305 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-73 | 115 | 309 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172656.1 | 0 | 15 | 386 | 5 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
Swiss-Prot | O65388 | 0 | 15 | 386 | 5 | 390 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
RefSeq | XP_002263615.1 | 0 | 39 | 386 | 49 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331545.1 | 0 | 36 | 386 | 41 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518441.1 | 0 | 29 | 386 | 19 | 377 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 41 | 379 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 41 | 379 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-17 | 186 | 307 | 115 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000004 | 185 | 305 | 187 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000001 | 188 | 317 | 205 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |