| Basic Information | |
|---|---|
| Species | Mimulus guttatus |
| Cazyme ID | mgv1a008720m |
| Family | PL1 |
| Protein Properties | Length: 365 Molecular Weight: 40578.7 Isoelectric Point: 7.6405 |
| Chromosome | Chromosome/Scaffold: 17 Start: 1181395 End: 1183497 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 95 | 274 | 0 |
| IVFEVSGTIELSSYLNVSSYKTVDGRGQRIKLTGKGLRLKECEHVIICNLVFEGGRGHDVDGIQIKPNSMHIWIDRCSLSDYDDGLIDITRQSTDITISR CYFANHDKTMLIGADPTHTGDRCIRITIHHCFFDGTRQRHPRVRFGKVHLYNNYTRDWGIYAVCASVESQIYSQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 365 Download |
| MGNHNSNRAP PYKFGPYSDQ SAPTTSAPIG YPTMGSRLLY SHVDITLRSL AGQAEGFGRF 60 AVGGLNGAVY RVVTLADDGP GSLREGCRRK EPLWIVFEVS GTIELSSYLN VSSYKTVDGR 120 GQRIKLTGKG LRLKECEHVI ICNLVFEGGR GHDVDGIQIK PNSMHIWIDR CSLSDYDDGL 180 IDITRQSTDI TISRCYFANH DKTMLIGADP THTGDRCIRI TIHHCFFDGT RQRHPRVRFG 240 KVHLYNNYTR DWGIYAVCAS VESQIYSQCN IYEAGQKKVA FKYYTEKAAD KAQECTGCIR 300 SEGDLFVTGT QPGLVPLPSE SCVFQPSEYY QTWTVETATN DLKQFLQNCT GWQGIPRPAD 360 LPTS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 2.0e-40 | 90 | 270 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 5.0e-45 | 62 | 281 | 239 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 6.0e-69 | 109 | 275 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 6 | 364 | 32 | 384 | unknown [Populus trichocarpa] |
| GenBank | ABK96132.1 | 0 | 17 | 364 | 40 | 387 | unknown [Populus trichocarpa] |
| RefSeq | XP_002277576.1 | 0 | 2 | 360 | 10 | 368 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309435.1 | 0 | 34 | 364 | 1 | 331 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323433.1 | 0 | 34 | 364 | 1 | 331 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 9.99967e-42 | 41 | 331 | 12 | 328 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 9.99967e-42 | 41 | 331 | 12 | 328 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-27 | 62 | 330 | 22 | 308 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 3e-25 | 111 | 272 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 1e-22 | 116 | 334 | 82 | 296 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO971975 | 261 | 15 | 275 | 0 |
| JG177860 | 304 | 55 | 358 | 0 |
| DY275282 | 326 | 38 | 361 | 0 |
| DY277275 | 311 | 38 | 348 | 0 |
| DY277275 | 25 | 337 | 361 | 0.27 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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