| Basic Information | |
|---|---|
| Species | Mimulus guttatus |
| Cazyme ID | mgv1a009885m |
| Family | PL1 |
| Protein Properties | Length: 329 Molecular Weight: 36543.2 Isoelectric Point: 6.6597 |
| Chromosome | Chromosome/Scaffold: 13 Start: 914219 End: 916193 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 62 | 241 | 0 |
| IKFEISGTIKLSSYLTISSHKTIDGRGQRIKITGKGLRLKECEHVIICNLEIEGGRGHDVDGIQIKPNSKHIWIDRCSLSDFGDGMIDITRESTDITISR CHFANHNKTILIGADASNTGDRCIRVTIHHCFFDGTKQRHPRVRFGKVHLYNNYTTNWGVYAVCASVESQIYSQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 329 Download |
| MGLHFPYCHV DSTLRALAGQ AEGFGRSAVG GLHGAVYCVT TLSDDGPGSL RDGCRKQEPL 60 WIKFEISGTI KLSSYLTISS HKTIDGRGQR IKITGKGLRL KECEHVIICN LEIEGGRGHD 120 VDGIQIKPNS KHIWIDRCSL SDFGDGMIDI TRESTDITIS RCHFANHNKT ILIGADASNT 180 GDRCIRVTIH HCFFDGTKQR HPRVRFGKVH LYNNYTTNWG VYAVCASVES QIYSQCNIYE 240 AGQKKVAFKY YTEKAADKEE ECTGCIKSEG DLFVCGTDSG LTPLPEENSV FNPSEYYEKW 300 TVEAPTDELK HFLQHCTGWQ DVPLPADI* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 0.005 | 61 | 184 | 139 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| pfam13229 | Beta_helix | 0.0006 | 97 | 196 | 100 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
| pfam00544 | Pec_lyase_C | 4.0e-39 | 57 | 237 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 1.0e-49 | 11 | 307 | 319 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 4.0e-67 | 69 | 242 | 188 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK96132.1 | 0 | 1 | 327 | 57 | 383 | unknown [Populus trichocarpa] |
| EMBL | CBI32661.1 | 0 | 5 | 327 | 4 | 324 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277576.1 | 0 | 5 | 327 | 48 | 368 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309435.1 | 0 | 1 | 327 | 1 | 327 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323433.1 | 0 | 1 | 327 | 1 | 327 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 6.02558e-44 | 11 | 298 | 15 | 328 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 6.02558e-44 | 11 | 298 | 15 | 328 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 9e-26 | 78 | 239 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 2e-25 | 66 | 307 | 52 | 317 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 5e-21 | 58 | 316 | 46 | 320 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| JG177860 | 304 | 22 | 325 | 0 |
| DY275282 | 326 | 3 | 328 | 0 |
| EL513630 | 280 | 2 | 281 | 0 |
| DY978143 | 277 | 5 | 281 | 0 |
| DW066041 | 303 | 26 | 326 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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