Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a011674m |
Family | PL1 |
Protein Properties | Length: 275 Molecular Weight: 30283.4 Isoelectric Point: 9.6288 |
Chromosome | Chromosome/Scaffold: 55 Start: 911522 End: 913307 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 3 | 193 | 0 |
IRLSQELIMTSNKTIDGRGAQIHIANGAGLTIQYVSNVVIHNIRIHDIKAGNGGLIRDSVNHYGYRSRSDGDAISMFGATNVWIDHVSLSKCVDGLIDAI EGSTAITISNSHFTHHNDVMLFGASDSYSGDQVMQITVAFNHFGKGLIQRMPRVRWGFVHIVNNDYTRWEMYAIGGSQHPTILSQGNNFVA |
Full Sequence |
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Protein Sequence Length: 275 Download |
MVIRLSQELI MTSNKTIDGR GAQIHIANGA GLTIQYVSNV VIHNIRIHDI KAGNGGLIRD 60 SVNHYGYRSR SDGDAISMFG ATNVWIDHVS LSKCVDGLID AIEGSTAITI SNSHFTHHND 120 VMLFGASDSY SGDQVMQITV AFNHFGKGLI QRMPRVRWGF VHIVNNDYTR WEMYAIGGSQ 180 HPTILSQGNN FVAPQDRFAK EVTKRDYAPE SVWKNWVWKS EGDVMKNGAF FKQSGDPKHK 240 FALGYGTIAP KPGGYVPSLT KFAGPLKCIK GRPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-28 | 13 | 191 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-68 | 7 | 191 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-79 | 1 | 194 | 205 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN77957.1 | 0 | 1 | 274 | 135 | 407 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 1 | 274 | 165 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272638.1 | 0 | 1 | 274 | 79 | 351 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 1 | 274 | 154 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 1 | 274 | 163 | 435 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 1 | 264 | 76 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 1 | 264 | 76 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-18 | 1 | 182 | 56 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.000000000000004 | 4 | 192 | 71 | 277 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.000000000000005 | 13 | 191 | 132 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO976508 | 248 | 1 | 248 | 0 |
GR194314 | 240 | 1 | 239 | 0 |
GO988261 | 240 | 1 | 239 | 0 |
EH715482 | 230 | 1 | 230 | 0 |
EH719739 | 253 | 24 | 275 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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