Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a012335m |
Family | GH28 |
Protein Properties | Length: 254 Molecular Weight: 27189.2 Isoelectric Point: 9.0708 |
Chromosome | Chromosome/Scaffold: 113 Start: 746137 End: 747540 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 58 | 252 | 0 |
AAACNFNGNARLLIPPGVYKLSETIFQGPCKSPTPITIFLQGTLQAVSDISAYPDKGWLSLDTINGVILTGGGTIDGQGQAVWPYNDCKTNPDCLHLPAS LYITKTRNAKIKSINFINSMGFHMHITQSYLIRLHSLTITAAENSPNTDGMHISKSNTVKVSRTHIRTGDDCVSIGQGSTNVTINQITCGPGHGI |
Full Sequence |
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Protein Sequence Length: 254 Download |
MAIKAISFAL LTFFAFSSLG FCNAAPIRAP VTTFNVMSYG AKPGKQDEST QAFMKAWAAA 60 CNFNGNARLL IPPGVYKLSE TIFQGPCKSP TPITIFLQGT LQAVSDISAY PDKGWLSLDT 120 INGVILTGGG TIDGQGQAVW PYNDCKTNPD CLHLPASLYI TKTRNAKIKS INFINSMGFH 180 MHITQSYLIR LHSLTITAAE NSPNTDGMHI SKSNTVKVSR THIRTGDDCV SIGQGSTNVT 240 INQITCGPGH GIR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 5.0e-46 | 34 | 252 | 226 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 4.0e-46 | 34 | 252 | 224 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-49 | 69 | 252 | 184 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-49 | 25 | 252 | 234 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 2.0e-72 | 29 | 252 | 225 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 32 | 252 | 54 | 274 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 7.00649e-45 | 34 | 252 | 490 | 712 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 32 | 252 | 54 | 274 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301488.1 | 0 | 51 | 252 | 2 | 203 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301489.1 | 0 | 29 | 252 | 41 | 264 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 0.0000002 | 124 | 252 | 71 | 212 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 0.0000002 | 124 | 252 | 72 | 199 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000002 | 124 | 252 | 72 | 199 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000002 | 124 | 252 | 72 | 199 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000002 | 124 | 252 | 72 | 199 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |