Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a017666m |
Family | GH28 |
Protein Properties | Length: 368 Molecular Weight: 40074.9 Isoelectric Point: 8.2137 |
Chromosome | Chromosome/Scaffold: 97 Start: 226872 End: 229294 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 368 | 0 |
EACNSIVPDATMVVPPGIFLVTHITFTGPCKSNNTNLIIFGTIIAPDDYKFIGSDKFWIVFHRVHWLSIFGGTLDAKGSSLWACKRAGNNCPFGARSITF QSCSYVLVSGLKSINSQRIHISINQCSNMTLRKLVIIAPSQSPNTDGIHIASSTGITISNSSIGTGDDCISIGPGSKSLLMDQIACGPGHGIRHNDFHFE SRKAMEDGVQDVNVTNSIFTMTQNGVRIKSWPSANDGYARNLLFKNLIMQNVSNPMIIDQDYCPHKNCPQKINSAVKVSQVTFENITGISWTRKAFTLRC SSTSPCDGIQLKDIDLHY |
Full Sequence |
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Protein Sequence Length: 368 Download |
MARVSPFSCT LFIALVAIKL CIIAAYNVVD FGAIGDGKTD STSSFLKAWD EACNSIVPDA 60 TMVVPPGIFL VTHITFTGPC KSNNTNLIIF GTIIAPDDYK FIGSDKFWIV FHRVHWLSIF 120 GGTLDAKGSS LWACKRAGNN CPFGARSITF QSCSYVLVSG LKSINSQRIH ISINQCSNMT 180 LRKLVIIAPS QSPNTDGIHI ASSTGITISN SSIGTGDDCI SIGPGSKSLL MDQIACGPGH 240 GIRHNDFHFE SRKAMEDGVQ DVNVTNSIFT MTQNGVRIKS WPSANDGYAR NLLFKNLIMQ 300 NVSNPMIIDQ DYCPHKNCPQ KINSAVKVSQ VTFENITGIS WTRKAFTLRC SSTSPCDGIQ 360 LKDIDLHY |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 5.0e-68 | 53 | 368 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-73 | 27 | 366 | 350 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-78 | 28 | 366 | 348 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-81 | 26 | 368 | 351 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-119 | 11 | 368 | 361 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172057.1 | 0 | 11 | 368 | 11 | 365 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002275740.1 | 0 | 1 | 368 | 1 | 363 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309713.1 | 0 | 26 | 368 | 27 | 364 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331632.1 | 0 | 1 | 368 | 1 | 363 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 24 | 368 | 25 | 364 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.000000000000004 | 119 | 366 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 3jur_D | 0.000000000001 | 27 | 307 | 29 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.000000000001 | 27 | 307 | 29 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.000000000001 | 27 | 307 | 29 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.000000000001 | 27 | 307 | 29 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |