Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a017703m |
Family | GH28 |
Protein Properties | Length: 454 Molecular Weight: 49352.9 Isoelectric Point: 9.2663 |
Chromosome | Chromosome/Scaffold: 66 Start: 723203 End: 725235 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 82 | 406 | 0 |
KSACKVIGGVVEIPSEFKFLIKPVTLQGPCMPNLVLQIDGTLLAPPKIGSWAKSNLYQWMNFKWLQNFTIQGTGTVDGQGSNWWCSSQVNKKKRAKKLPG IKPTALRFYSSYNVTVRDISIVNSPLCHLKFDNSKGVKVENVTISAPEDSPNTDGIHLQNSQDVEIMHSDIGTGDDCVSIQTGCSNIHVHHINCGPGHGI SLGGLGKDKSTACVSNILVENIVMQNTLYGARIKTWQGGIGSVKNVTFSNIQVSDVKVPITIDQYYCDKNQCKNQTGAVAISGVKFDQIIGTYLVQPIHL ACSSSVPCTDVDLISIQLEPSINNK |
Full Sequence |
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Protein Sequence Length: 454 Download |
MKRAFSLVLL LVIWLFVFSA LSIDARKYHT KKTKMHKNKK HKNNPAPAPA PLPDSSVFSI 60 LSFGAKANGV SDDSKALVSA WKSACKVIGG VVEIPSEFKF LIKPVTLQGP CMPNLVLQID 120 GTLLAPPKIG SWAKSNLYQW MNFKWLQNFT IQGTGTVDGQ GSNWWCSSQV NKKKRAKKLP 180 GIKPTALRFY SSYNVTVRDI SIVNSPLCHL KFDNSKGVKV ENVTISAPED SPNTDGIHLQ 240 NSQDVEIMHS DIGTGDDCVS IQTGCSNIHV HHINCGPGHG ISLGGLGKDK STACVSNILV 300 ENIVMQNTLY GARIKTWQGG IGSVKNVTFS NIQVSDVKVP ITIDQYYCDK NQCKNQTGAV 360 AISGVKFDQI IGTYLVQPIH LACSSSVPCT DVDLISIQLE PSINNKHGFQ QGLCWNSYGK 420 SLGPLAPASM DYCVRSGSEF VKRISKSHDI SCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 6.0e-73 | 91 | 400 | 311 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 5.0e-73 | 55 | 421 | 373 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-73 | 55 | 407 | 357 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 6.0e-75 | 52 | 400 | 354 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-92 | 57 | 448 | 396 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 24 | 452 | 29 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 24 | 452 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 26 | 448 | 31 | 461 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 58 | 438 | 1 | 375 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 1 | 452 | 7 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-28 | 148 | 350 | 110 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 5e-21 | 60 | 420 | 23 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 4e-19 | 156 | 385 | 79 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-19 | 156 | 385 | 79 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-19 | 156 | 385 | 79 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |