y
Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a018285m |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 43176.4 Isoelectric Point: 5.7411 |
Chromosome | Chromosome/Scaffold: 20 Start: 2040633 End: 2044277 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 61 | 381 | 0 |
SSSSSSPMMHVPSGKTFFVQPLEFDGPCESDTIIVEIEGNFVAPSDPSSWDCGKNDCENWISFRRVDGLRVSGHGSFDGRGQKWWDGKTLEIASSDDVRL GDGLRFKDSPRVHLVLNSLRNAYVSHVSIEAPESSPNTDGIRVSSCTNVHIDHTRIGTGDDCIAMIGGSSYVTISNITCGPGHGISIGSLGKNGGYDTAE HVRVGDVVFIGATNGARIKTWQGGKGYVRDILFERLLFHNTGNPIIIDQFYCDHAHCTTSESAIEIRNVTYRQILGTSRKKKVAVKLDCSETVPCRDIVF EDIHIIGIDGKIADYECRNVY |
Full Sequence |
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Protein Sequence Length: 397 Download |
MGDSSYNNTF FTVLLILSLL LLFTTNSEST VFNVLDYGAV GNGLTDDTNA FANAWKATCA 60 SSSSSSPMMH VPSGKTFFVQ PLEFDGPCES DTIIVEIEGN FVAPSDPSSW DCGKNDCENW 120 ISFRRVDGLR VSGHGSFDGR GQKWWDGKTL EIASSDDVRL GDGLRFKDSP RVHLVLNSLR 180 NAYVSHVSIE APESSPNTDG IRVSSCTNVH IDHTRIGTGD DCIAMIGGSS YVTISNITCG 240 PGHGISIGSL GKNGGYDTAE HVRVGDVVFI GATNGARIKT WQGGKGYVRD ILFERLLFHN 300 TGNPIIIDQF YCDHAHCTTS ESAIEIRNVT YRQILGTSRK KKVAVKLDCS ETVPCRDIVF 360 EDIHIIGIDG KIADYECRNV YGRSLGDKVP RLSCLY* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-79 | 33 | 367 | 351 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 6.0e-82 | 32 | 391 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 7.0e-96 | 32 | 395 | 376 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 3.0e-98 | 31 | 394 | 385 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 1.0e-102 | 32 | 384 | 354 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB10216.1 | 0 | 10 | 395 | 7 | 406 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI15273.1 | 0 | 13 | 396 | 7 | 389 | unnamed protein product [Vitis vinifera] |
EMBL | CBI15274.1 | 0 | 25 | 395 | 19 | 381 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002267133.1 | 0 | 25 | 395 | 19 | 390 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002267182.1 | 0 | 13 | 396 | 7 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-18 | 137 | 380 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-18 | 137 | 380 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-18 | 137 | 380 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-18 | 137 | 380 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-18 | 137 | 380 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |