| Basic Information | |
|---|---|
| Species | Mimulus guttatus |
| Cazyme ID | mgv1a018512m |
| Family | PL4 |
| Protein Properties | Length: 661 Molecular Weight: 75026 Isoelectric Point: 9.1194 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2318788 End: 2323261 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 42 | 646 | 0 |
| GVQLLEDDTHVVISNGIVSIRLTVPGGSVTNITYKGSDNLLFPENNEADRGHWDVVWNNTAHADQTDNFVGTSYKVIMQNENQTEISFTRTWTLNSTEAP LNVDKRYVMLKDSPGFYTYVVLERLPGWPVFYIQEGRVLFKLNENMFQYMAVSDSRQRFMPKVKDRENGKVLDYKEAVLLTNATNPAFNGEVDDKYLYTC DNKDIKVHGWVGSNPSLGFWMITPSNEFRTGGPLKQDLTTHLGPTVLHYFTSTHYSGEVLAIKFKTEEYWKKVIGPVYIYLNSNDSANADPSILWIDAKQ RMQKEEASWPYEFPLSDDFVKSNQRGALSGQLLVRDWFVNKQAVPGASAYVGLAPPGKVGSWQFENKGYQFWTKTNKDGSFSIKNVIPGNYSLFAYVPGF IGDYKHASDITITPGSNIQATNVVFDAPRNGPTLWEIGIPDRSAAEFFIPNTDSRFKIHQYKKPVERFRQYGLWERYEKLYPRKDLVFTIGSSNYSKDWF FSQVTRNVGGKFVGTTWQIFFNVKNVEKTGNYTLQLALASAHFAELQVRFNDRNSPPQFTTGTIGMDNALARHGIRGVYHYYSVPVPGSRLFVGRNTLFL TQPLT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 661 Download |
| MGISMFVGVV LQIFVLVANS EILHRKALKQ DNIIRDDLPS QGVQLLEDDT HVVISNGIVS 60 IRLTVPGGSV TNITYKGSDN LLFPENNEAD RGHWDVVWNN TAHADQTDNF VGTSYKVIMQ 120 NENQTEISFT RTWTLNSTEA PLNVDKRYVM LKDSPGFYTY VVLERLPGWP VFYIQEGRVL 180 FKLNENMFQY MAVSDSRQRF MPKVKDRENG KVLDYKEAVL LTNATNPAFN GEVDDKYLYT 240 CDNKDIKVHG WVGSNPSLGF WMITPSNEFR TGGPLKQDLT THLGPTVLHY FTSTHYSGEV 300 LAIKFKTEEY WKKVIGPVYI YLNSNDSANA DPSILWIDAK QRMQKEEASW PYEFPLSDDF 360 VKSNQRGALS GQLLVRDWFV NKQAVPGASA YVGLAPPGKV GSWQFENKGY QFWTKTNKDG 420 SFSIKNVIPG NYSLFAYVPG FIGDYKHASD ITITPGSNIQ ATNVVFDAPR NGPTLWEIGI 480 PDRSAAEFFI PNTDSRFKIH QYKKPVERFR QYGLWERYEK LYPRKDLVFT IGSSNYSKDW 540 FFSQVTRNVG GKFVGTTWQI FFNVKNVEKT GNYTLQLALA SAHFAELQVR FNDRNSPPQF 600 TTGTIGMDNA LARHGIRGVY HYYSVPVPGS RLFVGRNTLF LTQPLTTRRS SQKLCMIISV 660 * 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13620 | CarboxypepD_reg | 4.0e-5 | 368 | 466 | 99 | + Carboxypeptidase regulatory-like domain. | ||
| cd10316 | RGL4_M | 1.0e-30 | 365 | 460 | 96 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 3.0e-34 | 476 | 644 | 171 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 1.0e-59 | 47 | 331 | 286 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-66 | 48 | 233 | 189 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172460.6 | 0 | 54 | 647 | 1 | 600 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002308510.1 | 0 | 37 | 643 | 41 | 651 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527245.1 | 0 | 52 | 643 | 2 | 598 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527352.1 | 0 | 42 | 647 | 5 | 615 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527357.1 | 0 | 38 | 647 | 1 | 618 | lyase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nkg_A | 0.0003 | 297 | 641 | 166 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
| PDB | 3njv_A | 0.0003 | 297 | 641 | 166 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
| PDB | 2xhn_B | 0.0003 | 297 | 641 | 166 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
| PDB | 2xhn_A | 0.0003 | 297 | 641 | 166 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
| PDB | 3njx_A | 0.0005 | 297 | 641 | 166 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
