| Basic Information | |
|---|---|
| Species | Mimulus guttatus |
| Cazyme ID | mgv1a018762m |
| Family | GH28 |
| Protein Properties | Length: 413 Molecular Weight: 45984.6 Isoelectric Point: 8.7728 |
| Chromosome | Chromosome/Scaffold: 7 Start: 2314074 End: 2317010 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 87 | 406 | 0 |
| KAACSSMSGAEIVIPEMKTYLVRPTDFVGPCRSKVTLRVYGFIVAPQDPEVWDGLDVNKWLYFRRVNRLNIEGAGGLINGMGHEWWARSCKKNESNPCTN APTAVTFDKCKNLKVINITIFNSQQTHIAFTHCKGVEASGIILMSSDSPSTNGVHISASTNVELDTITVSTGNECISIGSNSSAIRMKNIFCRLGHGISI GSLGKYNSSGIVEDVVLNRAFFFHTETGLRIKTWQGGSGFVRKVVFENIWMINVSNPIVIDQYYCNSQLTCLNQTSSVRIENVSYIGIRGTSATDEAIKF ACSDSCPCKRLLLENIELTT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 413 Download |
| MVRKMRSSSS SNAFSSKFSV LKFICSSIYL IISRIRYSNG FNFNPLIHLP TNVLYRNTST 60 QLLNINDFGA QGDGFTDDTK SFREVWKAAC SSMSGAEIVI PEMKTYLVRP TDFVGPCRSK 120 VTLRVYGFIV APQDPEVWDG LDVNKWLYFR RVNRLNIEGA GGLINGMGHE WWARSCKKNE 180 SNPCTNAPTA VTFDKCKNLK VINITIFNSQ QTHIAFTHCK GVEASGIILM SSDSPSTNGV 240 HISASTNVEL DTITVSTGNE CISIGSNSSA IRMKNIFCRL GHGISIGSLG KYNSSGIVED 300 VVLNRAFFFH TETGLRIKTW QGGSGFVRKV VFENIWMINV SNPIVIDQYY CNSQLTCLNQ 360 TSSVRIENVS YIGIRGTSAT DEAIKFACSD SCPCKRLLLE NIELTTFEWK RCK 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 9.0e-78 | 43 | 405 | 365 | + polygalacturonase | ||
| PLN03010 | PLN03010 | 2.0e-79 | 61 | 405 | 348 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-82 | 90 | 405 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-101 | 63 | 404 | 344 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-174 | 43 | 404 | 365 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF61444.1 | 0 | 49 | 406 | 49 | 406 | AF138858_1 polygalacturonase [Solanum lycopersicum] |
| GenBank | ABM67700.1 | 0 | 13 | 406 | 8 | 398 | polygalacturonase [Citrus sinensis] |
| EMBL | CBI36284.1 | 0 | 21 | 410 | 10 | 398 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_565232.1 | 0 | 38 | 404 | 26 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002281827.1 | 0 | 21 | 410 | 4 | 392 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-18 | 157 | 406 | 119 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 8e-16 | 154 | 380 | 70 | 307 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1rmg_A | 0.000000000000008 | 59 | 406 | 17 | 340 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 3jur_D | 0.000000000003 | 63 | 373 | 28 | 385 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.000000000003 | 63 | 373 | 28 | 385 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EY133898 | 234 | 167 | 399 | 0 |
| EC954904 | 285 | 43 | 325 | 0 |
| EB680983 | 250 | 43 | 288 | 0 |
| FN026494 | 228 | 131 | 357 | 0 |
| FG140031 | 252 | 62 | 312 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
