Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a018832m |
Family | GH28 |
Protein Properties | Length: 429 Molecular Weight: 46158.7 Isoelectric Point: 7.4039 |
Chromosome | Chromosome/Scaffold: 7 Start: 2365791 End: 2368764 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 96 | 414 | 0 |
DNGVKISVPIGKKFLVSPIKFEGPCLCPNITFEILGSIIAQPKSAWKNKRSSEWIMFNRVEKLNVVGNEEGLIDGQGESWWLEAMIFSNCKNLEISGLKH INSPKFHISITDCHYANISSLQIIAPPLSPNTDGIDIASSSNIFIHNSTIKTGDDCIAIKGGTSNTTISEIVCGPGHGISIGSLGQHGKHDEVEGIKVLN CTLNGTDNGVRIKTWQGGSGFARNITFSNINFTAVENPIVIDQFYCPHKICNNKLSAVKVSNVSFVGIRGTSYKWKDATVSIRCSDTVPCTDILIDNVHI TSTVPRQPVSAVCINARGS |
Full Sequence |
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Protein Sequence Length: 429 Download |
GVLEYFMILL TVLELSNRNG PHATASPPYQ YGSSVFPSPS PSLSLFLSPS PSPSPLPPPP 60 QWTFDVMKFG AVGDGKTDDS TAFELTWKAA CKGISDNGVK ISVPIGKKFL VSPIKFEGPC 120 LCPNITFEIL GSIIAQPKSA WKNKRSSEWI MFNRVEKLNV VGNEEGLIDG QGESWWLEAM 180 IFSNCKNLEI SGLKHINSPK FHISITDCHY ANISSLQIIA PPLSPNTDGI DIASSSNIFI 240 HNSTIKTGDD CIAIKGGTSN TTISEIVCGP GHGISIGSLG QHGKHDEVEG IKVLNCTLNG 300 TDNGVRIKTW QGGSGFARNI TFSNINFTAV ENPIVIDQFY CPHKICNNKL SAVKVSNVSF 360 VGIRGTSYKW KDATVSIRCS DTVPCTDILI DNVHITSTVP RQPVSAVCIN ARGSVNDTSS 420 PIVNCLKY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-85 | 63 | 421 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 3.0e-91 | 63 | 424 | 378 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-101 | 64 | 421 | 376 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 6.0e-107 | 64 | 418 | 357 | + polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-109 | 64 | 427 | 375 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36306.1 | 0 | 17 | 426 | 78 | 493 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36306.1 | 0.0006 | 351 | 427 | 22 | 95 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 63 | 426 | 17 | 372 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266960.1 | 0 | 63 | 426 | 19 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002515526.1 | 0 | 64 | 426 | 28 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-21 | 166 | 340 | 117 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 7e-21 | 86 | 366 | 13 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 7e-19 | 156 | 387 | 68 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-19 | 156 | 387 | 68 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-19 | 156 | 387 | 68 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO951908 | 260 | 1 | 253 | 0 |
CX192293 | 244 | 103 | 340 | 0 |
DR050772 | 299 | 122 | 395 | 0 |
CV536748 | 250 | 131 | 367 | 0 |
EY474520 | 248 | 179 | 426 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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