| Basic Information | |
|---|---|
| Species | Mimulus guttatus |
| Cazyme ID | mgv1a019441m |
| Family | PL4 |
| Protein Properties | Length: 613 Molecular Weight: 70128.1 Isoelectric Point: 6.689 |
| Chromosome | Chromosome/Scaffold: 1520 Start: 4173 End: 8454 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 65 | 610 | 0 |
| RAGVQLVQDDKHVVISNGIVSMRLTVPGGSVTSITYNGSNNLLLPEYKEADRGHWDIVWNKTGQPYQTDNFEGTSYKVIMQNKNQTEISFTRTWTFNSTE APLNVDKRFVMLRDSPGFYTYAVLERLPGWPVFYIQEGRVVFKLNENMFQYMVVSDERQRYMPKVKDRTNGQVLDYKEAVLLTNATNPAFNREVDDKYLY TCDNKDIKVHGWVGSNPSLGFWMITPSNEFRTGGPLKQDLTTHLGPTVLHYFTSTHYSGEVLAIKFKTEEYWKKVIGPVYIYLNSNDFANADPSVLWIDA KQRMQKEEASWPYEFPLSDDFVKSNQRGALSGQLLVRDWFVNKQAVPGASAYVGLAPPGKVGSWQFENKGYQFWTKTNKDGSFSIKNVIPGNYSLFAYVP GFIGDYKHASDITITPGSNIQATNVVFDAPRNGPTLWEIGIPDRSAAEFFIPNTDSRFKIHQYKKPVERFRQYGLWERYEKLYPRKDLVFTIGSSNYSKD WFFSQVTRNVGGKFVGTTWQIFFNVKNVEKTGNYTLQLALASAHFA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 613 Download |
| MGISMFVGVV LQIFFLAANS QILHREEGNL GIYKDEDEDD DDDDDEVVRN ICICRKAALN 60 QDNIRAGVQL VQDDKHVVIS NGIVSMRLTV PGGSVTSITY NGSNNLLLPE YKEADRGHWD 120 IVWNKTGQPY QTDNFEGTSY KVIMQNKNQT EISFTRTWTF NSTEAPLNVD KRFVMLRDSP 180 GFYTYAVLER LPGWPVFYIQ EGRVVFKLNE NMFQYMVVSD ERQRYMPKVK DRTNGQVLDY 240 KEAVLLTNAT NPAFNREVDD KYLYTCDNKD IKVHGWVGSN PSLGFWMITP SNEFRTGGPL 300 KQDLTTHLGP TVLHYFTSTH YSGEVLAIKF KTEEYWKKVI GPVYIYLNSN DFANADPSVL 360 WIDAKQRMQK EEASWPYEFP LSDDFVKSNQ RGALSGQLLV RDWFVNKQAV PGASAYVGLA 420 PPGKVGSWQF ENKGYQFWTK TNKDGSFSIK NVIPGNYSLF AYVPGFIGDY KHASDITITP 480 GSNIQATNVV FDAPRNGPTL WEIGIPDRSA AEFFIPNTDS RFKIHQYKKP VERFRQYGLW 540 ERYEKLYPRK DLVFTIGSSN YSKDWFFSQV TRNVGGKFVG TTWQIFFNVK NVEKTGNYTL 600 QLALASAHFA ELQ 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13620 | CarboxypepD_reg | 2.0e-5 | 393 | 491 | 99 | + Carboxypeptidase regulatory-like domain. | ||
| cd10317 | RGL4_C | 8.0e-19 | 501 | 608 | 108 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10316 | RGL4_M | 1.0e-30 | 390 | 485 | 96 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 1.0e-60 | 70 | 351 | 288 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 5.0e-66 | 60 | 258 | 202 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002308510.1 | 0 | 54 | 613 | 33 | 595 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527229.1 | 0 | 67 | 613 | 40 | 592 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527245.1 | 0 | 77 | 612 | 2 | 541 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527352.1 | 0 | 67 | 613 | 5 | 555 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527357.1 | 0 | 67 | 613 | 5 | 558 | lyase, putative [Ricinus communis] |
