Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a019677m |
Family | GH28 |
Protein Properties | Length: 319 Molecular Weight: 33502.3 Isoelectric Point: 5.7203 |
Chromosome | Chromosome/Scaffold: 5 Start: 522805 End: 524813 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 63 | 302 | 0 |
DGSTNDAAALRIVDSSEVTISGIKVQNAPRMHIYIDNSQSITIFNVTISSPGDSPNTDGIHLTHAQHVEIYSSNIACGDDCVSIQTGTSDVKVHNVNCGP GHGFSIGGLGPDKSEAHVSDINVYDSTLSDALYGVRIKTWQDGTGSVNNITFSGITMSNVHNPIIIDQNYCNGAHGCSGTTTNAVAISGVTYKGITGTYT VTPVSLDCSQYKACSDLTISSINLTPSGSAKPDVVCNNAL |
Full Sequence |
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Protein Sequence Length: 319 Download |
METFLQTYVS FIICTLLCFT SSENTICYGR EGNYSSKLIA SSLVKNSTKA SSFDVRDYGA 60 KGDGSTNDAA ALRIVDSSEV TISGIKVQNA PRMHIYIDNS QSITIFNVTI SSPGDSPNTD 120 GIHLTHAQHV EIYSSNIACG DDCVSIQTGT SDVKVHNVNC GPGHGFSIGG LGPDKSEAHV 180 SDINVYDSTL SDALYGVRIK TWQDGTGSVN NITFSGITMS NVHNPIIIDQ NYCNGAHGCS 240 GTTTNAVAIS GVTYKGITGT YTVTPVSLDC SQYKACSDLT ISSINLTPSG SAKPDVVCNN 300 ALGHVLTPTT PPLTNCLK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 6.0e-53 | 82 | 303 | 223 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-53 | 61 | 286 | 227 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 1.0e-54 | 71 | 303 | 234 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 7.0e-66 | 71 | 301 | 232 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO24262.1 | 0 | 71 | 318 | 220 | 463 | putative style polygalacturonase [Turnera subulata] |
GenBank | ABV24999.1 | 0 | 71 | 318 | 221 | 467 | polygalacturonase 2 [Oncidium Gower Ramsey] |
DDBJ | BAB20805.2 | 0 | 17 | 317 | 121 | 424 | polygalacturonase [Zinnia elegans] |
RefSeq | NP_196969.1 | 0 | 71 | 318 | 173 | 419 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 5e-24 | 82 | 300 | 113 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-24 | 82 | 300 | 113 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-24 | 82 | 300 | 113 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 5e-24 | 82 | 300 | 113 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 5e-24 | 82 | 300 | 113 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |