y
Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a019884m |
Family | GH28 |
Protein Properties | Length: 399 Molecular Weight: 43056.3 Isoelectric Point: 5.1086 |
Chromosome | Chromosome/Scaffold: 12 Start: 1583098 End: 1585035 |
Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 45 | 372 | 0 |
CEIDGGIVSVPFGSFFISSADFKGPCNGQTLFRVDGTLIASDDSTLGNQDYWITFYKVDLLKLSGNGAFDGNGASSWSHCEGHKKCRNMPPSTLKINYVK NARIQGIKLINSKMFHVHIHESDNVVVKQVNILAPEDSPNTDGIHIGNSNGVRIMDSYIATGDDCVSMGEGSTNVNITGTWCGPGHGISIGSLGKYKEEK DVFGITVRNCTFNGTDNGLRIKTWAPSSSSTRVSDVTFSDIIINEVKNPIIIDQYYCPHGSCNSNGESTVEIKGVKFFDIKGSSTTETAVNIKCSKTKPC QDIEFSGLDLTLTNGQPTIASCSNTKEN |
Full Sequence |
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Protein Sequence Length: 399 Download |
MVVFICKVDD VCAQTNNFIV TDFGAIPNGK TDSKEGFLEA WKRACEIDGG IVSVPFGSFF 60 ISSADFKGPC NGQTLFRVDG TLIASDDSTL GNQDYWITFY KVDLLKLSGN GAFDGNGASS 120 WSHCEGHKKC RNMPPSTLKI NYVKNARIQG IKLINSKMFH VHIHESDNVV VKQVNILAPE 180 DSPNTDGIHI GNSNGVRIMD SYIATGDDCV SMGEGSTNVN ITGTWCGPGH GISIGSLGKY 240 KEEKDVFGIT VRNCTFNGTD NGLRIKTWAP SSSSTRVSDV TFSDIIINEV KNPIIIDQYY 300 CPHGSCNSNG ESTVEIKGVK FFDIKGSSTT ETAVNIKCSK TKPCQDIEFS GLDLTLTNGQ 360 PTIASCSNTK ENELGEQSGS VARQLDDPEV PAIIEHMN* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-71 | 17 | 380 | 371 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-72 | 18 | 366 | 357 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-79 | 8 | 375 | 372 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-83 | 52 | 370 | 320 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-104 | 13 | 377 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ63000.1 | 0 | 18 | 366 | 62 | 415 | oil palm polygalacturonase allergen PEST643 [Elaeis guineensis] |
GenBank | ACN85327.1 | 0 | 6 | 369 | 18 | 390 | polygalacturonase precursor [Oryza brachyantha] |
RefSeq | XP_002273801.1 | 0 | 1 | 369 | 13 | 382 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002276688.1 | 0 | 20 | 377 | 33 | 399 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002437276.1 | 0 | 10 | 375 | 24 | 395 | hypothetical protein SORBIDRAFT_10g024020 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-23 | 94 | 300 | 100 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 4e-19 | 116 | 368 | 73 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-19 | 116 | 368 | 73 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-19 | 116 | 368 | 73 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-19 | 116 | 368 | 73 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR462194 | 264 | 93 | 354 | 0 |
GR462094 | 265 | 78 | 340 | 0 |
CX191860 | 284 | 76 | 355 | 0 |
GR452615 | 265 | 66 | 328 | 0 |
GR463354 | 269 | 113 | 378 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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