Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a019967m |
Family | GH28 |
Protein Properties | Length: 367 Molecular Weight: 39200.6 Isoelectric Point: 9.9533 |
Chromosome | Chromosome/Scaffold: 2 Start: 3754491 End: 3756523 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 25 | 354 | 0 |
TAACNSVTPASVSVPRGIFLIRSVSFVGPCKNRILFQISGTLVAPDNYNVVGNSQFWILFYKVSRLSVVGGIIDAKGSKFWSCRRSGGNCPRGARSISFQ WCSNVIVNGLSSFNSQTVHMAINECSNMKIQNMKITAPSGSPNTDGIHIESSRGVTITGCTIRTGDDCISIGPGSMNMYMDNIGCGPGHGISIGSLGNGF NEDGVQNVTVTNSVFTKTQNGVRVKSWARPSGGYAKNLVFKNLIMRNVANPIIIDQRYCPGNSCPHQSSGVRVSQVTYKNIKGSSSTQAAMTFRCSSTNP CSGIRLQDIKLTYVNTLKRPTVSYCENAGG |
Full Sequence |
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Protein Sequence Length: 367 Download |
YNVVSFGARG DGRTDSTSAF LRAWTAACNS VTPASVSVPR GIFLIRSVSF VGPCKNRILF 60 QISGTLVAPD NYNVVGNSQF WILFYKVSRL SVVGGIIDAK GSKFWSCRRS GGNCPRGARS 120 ISFQWCSNVI VNGLSSFNSQ TVHMAINECS NMKIQNMKIT APSGSPNTDG IHIESSRGVT 180 ITGCTIRTGD DCISIGPGSM NMYMDNIGCG PGHGISIGSL GNGFNEDGVQ NVTVTNSVFT 240 KTQNGVRVKS WARPSGGYAK NLVFKNLIMR NVANPIIIDQ RYCPGNSCPH QSSGVRVSQV 300 TYKNIKGSSS TQAAMTFRCS STNPCSGIRL QDIKLTYVNT LKRPTVSYCE NAGGSTTGAV 360 LPRSCW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-85 | 28 | 352 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-91 | 2 | 363 | 369 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 8.0e-103 | 3 | 365 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 5.0e-104 | 1 | 365 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 7.0e-154 | 1 | 365 | 366 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181916.1 | 0 | 1 | 365 | 31 | 393 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002275740.1 | 0 | 1 | 365 | 27 | 388 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309713.1 | 0 | 1 | 365 | 27 | 389 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 1 | 365 | 27 | 389 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529094.1 | 0 | 1 | 366 | 26 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-22 | 94 | 351 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-22 | 94 | 351 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-22 | 94 | 351 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-22 | 94 | 351 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-22 | 94 | 351 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CK276500 | 275 | 1 | 275 | 0 |
DY281549 | 316 | 1 | 313 | 0 |
JZ193571 | 285 | 1 | 284 | 0 |
JZ191937 | 301 | 66 | 365 | 0 |
JZ194028 | 282 | 59 | 339 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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