y
Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a020057m |
Family | GH28 |
Protein Properties | Length: 377 Molecular Weight: 41016.6 Isoelectric Point: 8.7401 |
Chromosome | Chromosome/Scaffold: 34 Start: 1542638 End: 1545506 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 35 | 362 | 0 |
DACRYYGRSRVWIPKGTYFVGSVTFEGPCNGPIAFLIKGTLKAPTNPQHFLTDTWIGFRYVDSLTVKGGGYLDGQGASAWKFNNCHTNPQCRTLPATLRF DFLTNSKLSHIRSINSKNTHINIFACNFMEISNMRITAPSNSPNTDGIRIGSSNQISISDSVIQTGDDCIAMVSGSQNINITGVACGPGHGISVGSLGRN HEHEYVMNINIRNCTFFASDNGVRIKTWAPSLTSLASNITFQDIQMINVRNPIIIDQQYCPYSTCLEAESAVQIENVLFKNIWGTSSTKVALNMQCSGAL PCKNVNLININLAYRGRRGHALALCSHV |
Full Sequence |
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Protein Sequence Length: 377 Download |
VYGDLPPKIF DVTKYGAVAN GKTDASQAFL RAWRDACRYY GRSRVWIPKG TYFVGSVTFE 60 GPCNGPIAFL IKGTLKAPTN PQHFLTDTWI GFRYVDSLTV KGGGYLDGQG ASAWKFNNCH 120 TNPQCRTLPA TLRFDFLTNS KLSHIRSINS KNTHINIFAC NFMEISNMRI TAPSNSPNTD 180 GIRIGSSNQI SISDSVIQTG DDCIAMVSGS QNINITGVAC GPGHGISVGS LGRNHEHEYV 240 MNINIRNCTF FASDNGVRIK TWAPSLTSLA SNITFQDIQM INVRNPIIID QQYCPYSTCL 300 EAESAVQIEN VLFKNIWGTS STKVALNMQC SGALPCKNVN LININLAYRG RRGHALALCS 360 HVLGSTSGQQ NPPGCL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 2.0e-84 | 9 | 376 | 371 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-95 | 7 | 346 | 346 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-97 | 8 | 376 | 379 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-99 | 47 | 362 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-128 | 9 | 375 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71796.1 | 0 | 8 | 376 | 33 | 411 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
RefSeq | NP_173158.1 | 0 | 7 | 376 | 30 | 401 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_177961.2 | 0 | 8 | 376 | 33 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179147.1 | 0 | 7 | 376 | 28 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002273801.1 | 0 | 8 | 376 | 28 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 6e-19 | 98 | 319 | 74 | 294 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 1ib4_A | 6e-19 | 98 | 319 | 74 | 294 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 1ia5_A | 6e-19 | 98 | 319 | 74 | 294 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 3e-18 | 97 | 319 | 71 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-18 | 97 | 319 | 71 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY968263 | 254 | 7 | 260 | 0 |
DW145478 | 241 | 7 | 247 | 0 |
EC987202 | 278 | 10 | 286 | 0 |
CO114621 | 284 | 12 | 294 | 0 |
CO101156 | 283 | 14 | 295 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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