Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a021443m |
Family | GH28 |
Protein Properties | Length: 465 Molecular Weight: 50951.7 Isoelectric Point: 6.6435 |
Chromosome | Chromosome/Scaffold: 17 Start: 96780 End: 99288 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 92 | 420 | 0 |
WDNACQSDESAVILVPKHYTFMIQSAIFTGPCKNGLVFQIEGSMMPPDGPNSWPKNFSKRQWLVFYRINGMTMQGGGLIDGRGQKWWDLPCKPHKVKNGT IPPGPCDSPVALRFFWSSKLIVKGLKIKNSPQFHFRFDSCHDVHIDSLYVKSPSGSPNTDGIHIENSNDVQIYNSVISNGDDCVSIGAGSYNVDIRNITC GPSHGISIGSLGIKNSRACVSNITVRDSVIKHSDNGVRIKTWQGGYGSVSKITFDNIHMDTVRNPIMIDQYYCSNKACLNQSSAVYVNDISYTNIKGTYD VRSPPMHLACSDAVPCTNLTLYDVELLPS |
Full Sequence |
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Protein Sequence Length: 465 Download |
MDYYSSCGRY FVVVFVTTLC FLALSVQCRP FEYSEFRVLS QISASPSPAP EGSDSFSPSS 60 RENSSAAVFS VMSYGAVGDG VSDDTQAFKT AWDNACQSDE SAVILVPKHY TFMIQSAIFT 120 GPCKNGLVFQ IEGSMMPPDG PNSWPKNFSK RQWLVFYRIN GMTMQGGGLI DGRGQKWWDL 180 PCKPHKVKNG TIPPGPCDSP VALRFFWSSK LIVKGLKIKN SPQFHFRFDS CHDVHIDSLY 240 VKSPSGSPNT DGIHIENSND VQIYNSVISN GDDCVSIGAG SYNVDIRNIT CGPSHGISIG 300 SLGIKNSRAC VSNITVRDSV IKHSDNGVRI KTWQGGYGSV SKITFDNIHM DTVRNPIMID 360 QYYCSNKACL NQSSAVYVND ISYTNIKGTY DVRSPPMHLA CSDAVPCTNL TLYDVELLPS 420 LGQRILDPFC WNAYGDIKAV TVPPVFCLME GFPQALLSSD VDQC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-81 | 64 | 448 | 391 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 3.0e-85 | 64 | 444 | 386 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-96 | 96 | 417 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-101 | 70 | 417 | 351 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-126 | 55 | 452 | 401 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 64 | 464 | 84 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 9 | 464 | 5 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318932.1 | 0 | 53 | 463 | 58 | 471 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330008.1 | 0 | 66 | 454 | 19 | 407 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 13 | 464 | 5 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 6e-28 | 132 | 417 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-28 | 132 | 417 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-28 | 132 | 417 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-28 | 132 | 417 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 6e-28 | 132 | 417 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |