Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a021591m |
Family | GH28 |
Protein Properties | Length: 412 Molecular Weight: 43677.1 Isoelectric Point: 8.0562 |
Chromosome | Chromosome/Scaffold: 109 Start: 401363 End: 403721 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 27 | 353 | 0 |
NATCKVNGGVMIVPSGYTFLLQPITLNGNYCQSKVVVQIDGKIVAPNKPQWSKIDLQLILFSGMGKGITIQGNGGTIDGRGDSWWSAGGNRPHALRIVDS SNVTVTGIKVLNAPRMHVFIDNSQYVHIFNVTVSSPGNSPNTDGIHLTHAQHVEIYSSNIACGDDCISIQTGSQDVKIHNVDCGPGHGYSIGGLSANKTE SQVSDISIYDSTVSNALNGVRIKTWPDGNGFVRNVTYSNIKMKDVSMPINIDQHYCGGPHTCPTTSTNAVAISGVSYWGITGTYTHIPVSLDCSKYKPCR GLTFSSINLTPSASGNIPKGYPFCSNA |
Full Sequence |
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Protein Sequence Length: 412 Download |
SSFDVRSYGA KGDGVTNDAG AFQTAWNATC KVNGGVMIVP SGYTFLLQPI TLNGNYCQSK 60 VVVQIDGKIV APNKPQWSKI DLQLILFSGM GKGITIQGNG GTIDGRGDSW WSAGGNRPHA 120 LRIVDSSNVT VTGIKVLNAP RMHVFIDNSQ YVHIFNVTVS SPGNSPNTDG IHLTHAQHVE 180 IYSSNIACGD DCISIQTGSQ DVKIHNVDCG PGHGYSIGGL SANKTESQVS DISIYDSTVS 240 NALNGVRIKT WPDGNGFVRN VTYSNIKMKD VSMPINIDQH YCGGPHTCPT TSTNAVAISG 300 VSYWGITGTY THIPVSLDCS KYKPCRGLTF SSINLTPSAS GNIPKGYPFC SNAYGRVLTS 360 TTPPLDKCLV SEAYDQATAP TPAMAPNQGR TQALLWGAAA PARNVFGLFF N* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-75 | 1 | 353 | 364 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-76 | 36 | 346 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 4.0e-76 | 1 | 386 | 405 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 3.0e-79 | 3 | 345 | 348 | + polygalacturonase | ||
PLN02793 | PLN02793 | 4.0e-90 | 3 | 364 | 374 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 1 | 369 | 44 | 425 | polygalacturonase PG1 [Glycine max] |
GenBank | ACU24545.1 | 0 | 1 | 369 | 44 | 425 | unknown [Glycine max] |
DDBJ | BAB20805.2 | 0 | 1 | 371 | 61 | 426 | polygalacturonase [Zinnia elegans] |
RefSeq | NP_196969.1 | 0 | 2 | 379 | 50 | 428 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002521450.1 | 0 | 1 | 369 | 75 | 453 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 5e-25 | 84 | 346 | 62 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-25 | 84 | 346 | 62 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-25 | 84 | 346 | 62 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-25 | 84 | 346 | 62 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 5e-25 | 84 | 346 | 62 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO844129 | 336 | 10 | 325 | 0 |
ES800057 | 346 | 43 | 349 | 0 |
CO731672 | 257 | 116 | 371 | 0 |
FF398318 | 237 | 133 | 369 | 0 |
JG881257 | 285 | 96 | 361 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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