Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a021627m |
Family | GH28 |
Protein Properties | Length: 378 Molecular Weight: 39661 Isoelectric Point: 8.3154 |
Chromosome | Chromosome/Scaffold: 2 Start: 3763678 End: 3765134 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 366 | 0 |
GAACAATSPATIYVPPGRYLLRNAYFGGKLCKNSAITIRIDGTLGRRSSIFGGTLDAQGTKLWACKNSGKSCPKGATSLAFYNSENIEINGLASLNSQKF HILVDGCKSVKMINMKISAPANSPNTDGIHIQQSSEVTVMNTHIGTGDDCISVGPGSSNLWIENLACGPGHGISIGSLGWDLEEAGVQNVTVKTVTFTGT ENGVRVKTWARPSNGFVKNVLFQHLVVVNVENPIIIDQNYCPDHQNCPTQGSGVKISDVAYEDIHGTSATQVAVKFDCSKKNPCSGITLDGVNLSYRDKA ATASCANAAGS |
Full Sequence |
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Protein Sequence Length: 378 Download |
MAAKTNIQIF ILIITIQLFY YPSSSLAANP TYNVQSFGAK SGGSSDCTKA FLSAWGAACA 60 ATSPATIYVP PGRYLLRNAY FGGKLCKNSA ITIRIDGTLG RRSSIFGGTL DAQGTKLWAC 120 KNSGKSCPKG ATSLAFYNSE NIEINGLASL NSQKFHILVD GCKSVKMINM KISAPANSPN 180 TDGIHIQQSS EVTVMNTHIG TGDDCISVGP GSSNLWIENL ACGPGHGISI GSLGWDLEEA 240 GVQNVTVKTV TFTGTENGVR VKTWARPSNG FVKNVLFQHL VVVNVENPII IDQNYCPDHQ 300 NCPTQGSGVK ISDVAYEDIH GTSATQVAVK FDCSKKNPCS GITLDGVNLS YRDKAATASC 360 ANAAGSAAGV VRPTSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 6.0e-82 | 34 | 377 | 372 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-86 | 24 | 349 | 353 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-86 | 59 | 354 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-99 | 27 | 352 | 346 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 5.0e-120 | 25 | 377 | 374 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB09575.1 | 0 | 14 | 377 | 4 | 389 | abscission polygalacturonase [Solanum lycopersicum] |
GenBank | AAC28905.1 | 0 | 25 | 377 | 15 | 387 | polygalacturonase 4 [Solanum lycopersicum] |
GenBank | AAC28906.1 | 0 | 25 | 377 | 15 | 387 | polygalacturonase 5 [Solanum lycopersicum] |
GenBank | AAC70951.1 | 0 | 25 | 377 | 23 | 395 | polygalacturonase 7 [Solanum lycopersicum] |
GenBank | ACA49228.1 | 0 | 46 | 377 | 3 | 354 | putative polygalacturonase [Olea europaea] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 3e-19 | 23 | 349 | 12 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 5e-19 | 103 | 350 | 111 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 3e-16 | 107 | 322 | 81 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 3e-16 | 107 | 322 | 81 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 3e-16 | 107 | 322 | 81 | 294 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |