| Basic Information | |
|---|---|
| Species | Mimulus guttatus |
| Cazyme ID | mgv1a021987m |
| Family | PL1 |
| Protein Properties | Length: 349 Molecular Weight: 38506.6 Isoelectric Point: 7.552 |
| Chromosome | Chromosome/Scaffold: 7 Start: 1055310 End: 1056755 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 72 | 271 | 0 |
| WITFQRDMSIKLEKPLLVNSFTTIDGRGVIVDIAYGACLLLQEANNVIIHGLRIHDCVAQGAGPVMGPNGKIVQLGPVDGDAIRMVGSSKIWVDHNTLFD SHDGLIDVTRGSTDITISNNWFRFQDKVMLLGHDDGFQADKGMKVTVAFNHFGPHCQQRMPRVRFGYAHVVNNLYLGWGQYAIGGSMNPNIKSQANLFIA | |||
| Full Sequence |
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| Protein Sequence Length: 349 Download |
| MNVIDKCWRT NPNWRSNRHQ LATCSVGYVG KMRNNTGPDV TNYKVTDPSD DALDPKPGTL 60 RYAMTSIKGK VWITFQRDMS IKLEKPLLVN SFTTIDGRGV IVDIAYGACL LLQEANNVII 120 HGLRIHDCVA QGAGPVMGPN GKIVQLGPVD GDAIRMVGSS KIWVDHNTLF DSHDGLIDVT 180 RGSTDITISN NWFRFQDKVM LLGHDDGFQA DKGMKVTVAF NHFGPHCQQR MPRVRFGYAH 240 VVNNLYLGWG QYAIGGSMNP NIKSQANLFI APEGNNKEIT WDSSEDGNFM SIHDVFENGA 300 SFKESLDEGA VVSPDYRPDQ NFEVADGRVV RSLTKSAGAL KCPRISRC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-28 | 61 | 341 | 304 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-58 | 91 | 269 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-68 | 78 | 272 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 32 | 348 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 1 | 348 | 19 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 1 | 348 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 1 | 348 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 279 | 29 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 2 | 340 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 2 | 340 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 3e-19 | 87 | 269 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 3e-18 | 65 | 271 | 42 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.000000000000001 | 69 | 269 | 61 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DR808308 | 255 | 2 | 249 | 0 |
| DT575750 | 224 | 123 | 342 | 0 |
| FD757999 | 197 | 85 | 281 | 0 |
| HO778688 | 357 | 2 | 349 | 0 |
| EL457563 | 282 | 2 | 280 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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