y
Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a022372m |
Family | GH28 |
Protein Properties | Length: 364 Molecular Weight: 39037.6 Isoelectric Point: 7.9233 |
Chromosome | Chromosome/Scaffold: 97 Start: 215906 End: 218267 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 364 | 0 |
NAACNSIVPDATMVVPPGIFLVRYITFTGPCKSNNTELFIFGTIIAPDDYKFIGSDQFWIVFYRVNWLSIYGGTLDAKGSSLWACKSAGNDCPFGARSIT FQSCSYVLVSGLKSINSQRIHISINQCSNMTLRKLVIIAPSRSPNTDGIHIESSTGITISNSSIGTGDDCISIGPGSKSLLMDQIACGPGHGISIGSLGR TAIEDGVQDVNVTNSIFTMTQNGVRVKSFPTASDGYAKNLLFKNLIMQNASNPMIIDQDYCPHGTCSQKNSAVKVSQVTFENITGTSWTRKAFTLRCSST SPCDGIQLKDIDLHY |
Full Sequence |
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Protein Sequence Length: 364 Download |
MAGVSQISCK LFIALVAIKL CTIAAFNVVD FGAIGDGKTD STSSFLKAWN AACNSIVPDA 60 TMVVPPGIFL VRYITFTGPC KSNNTELFIF GTIIAPDDYK FIGSDQFWIV FYRVNWLSIY 120 GGTLDAKGSS LWACKSAGND CPFGARSITF QSCSYVLVSG LKSINSQRIH ISINQCSNMT 180 LRKLVIIAPS RSPNTDGIHI ESSTGITISN SSIGTGDDCI SIGPGSKSLL MDQIACGPGH 240 GISIGSLGRT AIEDGVQDVN VTNSIFTMTQ NGVRVKSFPT ASDGYAKNLL FKNLIMQNAS 300 NPMIIDQDYC PHGTCSQKNS AVKVSQVTFE NITGTSWTRK AFTLRCSSTS PCDGIQLKDI 360 DLHY 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 3.0e-75 | 53 | 364 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-79 | 12 | 362 | 361 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 9.0e-86 | 26 | 364 | 350 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 6.0e-86 | 26 | 362 | 345 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 4.0e-121 | 11 | 364 | 357 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002331632.1 | 0 | 1 | 364 | 1 | 363 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 24 | 364 | 25 | 364 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529094.1 | 0 | 24 | 364 | 24 | 363 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529095.1 | 0 | 7 | 364 | 6 | 363 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529097.1 | 0 | 24 | 364 | 23 | 362 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.000000000000003 | 119 | 362 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.00000000000001 | 51 | 335 | 16 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.00000000000001 | 51 | 335 | 16 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.00000000000001 | 51 | 335 | 16 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.00000000000001 | 51 | 335 | 16 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |